Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq21 104 2e-17 seq24 100 2e-16 seq3 95.1 1e-14 >seq21 Length=1919465 Score = 104 bits (114), Expect = 2e-17 Identities = 165/232 (71%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCAT-GTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || |||||||| ||||| || || ||| || ||||||| | |||||||| Sbjct 1444401 GTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGC-CGTCTTCCAATTGTTTACC 1444343 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| |||||||||| |||||||| || || | ||| || || || ||||||| | || Sbjct 1444342 GGCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGTCTT 1444283 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | |||| | |||||| | ||||||| || | || || | || || || | ||| Sbjct 1444282 GACATTTTCAATAGTGTCAGAACCTTCAACCTCCAAGGTAATGGTCTTACCAGTTAAAGT 1444223 Query 27230 TTTCACAAAGATTTGCAT-AGCTGCTAAAAATTTATTAAACCTTATTATATT 27280 ||| ||||| |||||||| | || || | |||||||| ||| ||||| Sbjct 1444222 TTTTACAAAAATTTGCATGATTTGTTACTA--TTATTAAATATTAAAATATT 1444173 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCAT-GTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || |||||||| ||||| || || ||| || ||||||| | |||||||| Sbjct 1445085 GTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGC-CGTCTTCCAATTGTTTACC 1445027 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| |||||||||| |||||||| || || | ||| || || || |||||| | || Sbjct 1445026 GGCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTTGGTCTT 1444967 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | |||||||| ||||| || | || || || || || Sbjct 1444966 GACATTCTCAATGGTGTCAGATCCCTCAACTTCAAGAGTGATGGTCTTACCAGTGAGGGT 1444907 Query 27230 TTTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 1444906 CTTTACAAAGATTTGCATA 1444888 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||| || |||||| || | | ||||||| | ||||||||| Sbjct 1352576 GTTGATTCCTTTTGAATGTTATAGTCGGACAAAGTTCTTCCGTCTTCTAATTGTTTACCG 1352517 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||||||||| |||||||| || || | ||| || || || |||||| || Sbjct 1352516 GCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTTGGCCTTT 1352457 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | || || | |||| ||||| | ||| |||| ||| || || || || Sbjct 1352456 ACGTTTTCAATGGTATCGGATCCTTCCACTTCCAAAGTGATAGTTTTACCAGTGAGGGTC 1352397 Query 27231 TTCACAAAGATTTGCATA 27248 || || || ||||||||| Sbjct 1352396 TTGACGAAAATTTGCATA 1352379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCAT-GTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || |||||||| ||||| || || ||| || ||||||||||||| || || Sbjct 1444629 GTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGC-CGTCTTCGAGCTGCTTGCC 1444571 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || ||||| |||||||| || || | || || || || ||||||| | || Sbjct 1444570 AGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGGTCTT 1444511 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | |||||| | | || ||||| ||||| || | ||||| |||| || Sbjct 1444510 GACATTCTCGATAGTGTCAGATCCCTCGACTTCAAGAGTGATGGTCTTGCCGGTCAATGT 1444451 Query 27230 TTTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 1444450 CTTGACAAAGATTTGCATA 1444432 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCAT-GTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||||||| | ||| || ||||||| | |||||||| Sbjct 1444857 GTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTGC-CGTCTTCTAATTGTTTACC 1444799 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || ||||| |||||||| || || | ||| || || || |||||| | || Sbjct 1444798 GGCAAAGATAAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTTGGTCTT 1444739 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | |||| | ||||| | |||| ||||| || || || | || || || || || Sbjct 1444738 GACGTTTTCAATGGTGTCCGAACCTTCGACTTCGAGGGTGATGGTCTTACCAGTGAGGGT 1444679 Query 27230 TTTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 1444678 CTTGACAAAGATTTGCATA 1444660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCAT-GTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||||||| | ||| || ||||||||||||| || || Sbjct 1445313 GTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTGC-CGTCTTCGAGCTGCTTTCC 1445255 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || ||||| |||||||| || || | ||| || || || ||||||| |||| Sbjct 1445254 AGCAAAGATAAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGTTTT 1445195 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | |||| | ||||| | | || ||||| ||||| || | || || || | || Sbjct 1445194 GACATTTTCAATGGTGTCAGATCCCTCGACTTCAAGAGTGATGGTCTTACCAGTTAATGT 1445135 Query 27230 TTTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 1445134 CTTTACAAAGATTTGCATA 1445116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 || || || || || | ||||| | ||| | || || || |||||||| || |||||| Sbjct 1352837 TTACCACCACGTAATCTTAATACGAGATGGAGAGTTGATTCCTTTTGAATGTTATAGTCG 1352778 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | | ||||||| | || || || || | || ||||| |||||||| || Sbjct 1352777 GACAAAGTTCTTCCGTCTTCTAATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGT 1352718 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||| || || || |||||| || | | || | |||||| | ||||| Sbjct 1352717 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCGATAGTGTCGGATCCTTCA 1352658 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| ||||| || | || || || | || || ||||||||||||||| Sbjct 1352657 ACTTCAAGAGTGATGGTCTTACCGGTTAATGTCTTTACAAAGATTTGCATA 1352607 >seq24 Length=3408800 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||| || ||||| ||| | | || ||||||| | ||||||||| Sbjct 192441 GTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTCTAATTGTTTACCG 192500 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | |||||||| |||||||| || || | ||| || || || |||||| | || Sbjct 192501 GCAAAGATGAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGAATCTTGGTCTTG 192560 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||| | |||| ||||| | || || | ||||| |||| || Sbjct 192561 ACATTTTCGATAGTGTCAGAACCTTCGACTTCCAAGGTGATGGTCTTGCCGGTCAATGTC 192620 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 192621 TTGACAAAGATTTGCATA 192638 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27102 TGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATC 27161 |||||||||||| |||||||||| |||||||| || || | ||| || || || ||| Sbjct 192948 TGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGAATC 193007 Query 27162 TTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCC 27221 ||| | || | |||| | |||||| | | |||| ||||| | || || | ||| || Sbjct 193008 TTGGTCTTGACATTTTCGATAGTGTCAGAGCCTTCTACTTCCAAGGTAATGGTTTTACCT 193067 Query 27222 GTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||||| |||||||||||||| Sbjct 193068 GTTAATGTTTTAACAAAGATTTGCAT 193093 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCAT-GTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || |||||||| || ||| || ||||||| | |||||||| Sbjct 192669 GTGGATTCCTTTTGGATGTTGTAGTCCGACAAAGTTCTGC-CGTCTTCTAATTGTTTACC 192727 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || ||||| |||||||| || || | ||| || || || |||||| | || Sbjct 192728 GGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGAATCTTGGTCTT 192787 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | |||| | |||||| | |||| ||||| || || || | || || || || || Sbjct 192788 GACATTTTCGATAGTGTCGGATCCTTCGACTTCGAGGGTGATGGTCTTACCAGTGAGGGT 192847 Query 27230 TTTCACAAAGATTTGCATA 27248 || ||||| ||||||||| Sbjct 192848 CTTGACAAAAATTTGCATA 192866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 27102 TGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCT-CTTTATCGGCGAT 27160 |||||||||||| |||||||||| |||||||| || || | ||| | | || || ||| Sbjct 192263 TGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGTGGGATACCTTCCCTTGTCTTGGAT 192322 Query 27161 CTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCC 27220 |||| | || | |||| | ||||| | | || ||||| ||||| || | || || Sbjct 192323 CTTGGTCTTGACATTTTCAATGGTGTCAGATCCCTCGACTTCAAGAGTGATGGTCTTACC 192382 Query 27221 CGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || ||||||||||||||| Sbjct 192383 AGTGAGGGTCTTGACAAAGATTTGCATA 192410 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||| ||||| || | | | | | || || | ||||||||| Sbjct 191984 GTGGATTCCTTTTGAATGTTGTAATCCGAGAGGGTTCTGCCATCCTCTAATTGTTTACCG 192043 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || ||||| |||||||| || || | ||| || || || |||||| | || Sbjct 192044 GCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGAATCTTGGTCTTA 192103 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | ||||| | |||| ||||| ||||| || | || || |||| || Sbjct 192104 ACGTTTTCAATGGTGTCGGATCCTTCGACTTCAAGAGTGATGGTCTTACCAGTCAATGTC 192163 Query 27231 TTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 192164 TTGACAAAGATCTGCATA 192181 >seq3 Length=2750715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 250/381 (66%), Gaps = 3/381 (1%) Strand=Plus/Plus Query 131608 TTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATC 131667 |||| | ||||| | | ||||||| || | |||||||| || || | |||||| | ||| Sbjct 2513286 TTCGTTTGGACAAAACAACGACCACTCGGCATTCTGTTCGACACGTTCCATAAAGAGATC 2513345 Query 131668 CGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttt 131727 | ||||| | ||||| || || || | || |||||||| |||| | || Sbjct 2513346 GGATACCCAGAGTGCGTAAAAGAGGTCACGGGCACGCATCTCTTCTTTACCGTGGTTCTT 2513405 Query 131728 tttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGC 131787 ||| | | | ||| || |||||||||| ||||| ||||| | || || || | || Sbjct 2513406 TTTAAGGTCGAGAAACTCGAAAATGTCCGAGTGCCATGGTTCGAGGTAGACAGCAAACGC 2513465 Query 131788 GCCTTTGCGCTTACCGCC---TTGATTAACATGACGAACCATGTTGTTGTATACGCGCAA 131844 || || | ||| || || ||| | |||| ||| | | | ||| | || || | Sbjct 2513466 ACCCTTTCTCTTGCCTCCACCTTGGTCGACATAACGGGCAGTATCGTTAAACACACGTAG 2513525 Query 131845 CATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCT 131904 ||| ||| ||||||||||| | || ||||| | || ||| | ||| | Sbjct 2513526 CATTGGCACCAAACCGTTGCTAGTACCGTTGGTTCCACGGATATAGGATCGTGCGGCACG 2513585 Query 131905 GATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGT 131964 ||| ||||| ||| || |||||||| ||| | || || || || || |||| | Sbjct 2513586 GATCTTGTGCACGGCGATACCAATACCACCGGCACTCTTGGAAATGAGGGCACATTGCTT 2513645 Query 131965 TAGAGTGTTATAGATACCTTC 131985 || |||| ||| |||||||| Sbjct 2513646 GAGCGTGTCATAAATACCTTC 2513666 Score = 82.4 bits (90), Expect = 6e-11 Identities = 133/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 130792 GTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGT 130851 |||||||||||| ||| | |||||||| | || |||||||||| || |||| || | Sbjct 2512458 GTAAATGTTGCTAGTGTATGGTTCAAAACACTCATTGTTGCCGAGAATCTGTGAGGTGGA 2512517 Query 130852 TGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCG 130911 ||| || |||||| ||| || | | || ||||| |||||||| | ||| | | Sbjct 2512518 TGCTGTTGGCATGGGTGCGACGAGCAACGAGTTACGTAGACCGTGTTTGACGATACGTTG 2512577 Query 130912 CTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTG 130971 || | | |||| ||||| | | | |||| |||| | |||||| |||||||| Sbjct 2512578 TTTGAGAGCGGCCCAGTCCCAACGGGCAGATGGTTGGACA---TCCCACATGTCAAATTG 2512634 Query 130972 TAGTATGCCTT 130982 ||| || |||| Sbjct 2512635 TAGGATACCTT 2512645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934270527800