Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 235 7e-57 seq5 91.5 2e-13 seq1 87.8 2e-12 seq9 86.0 8e-12 seq16 82.4 1e-10 >seq3 Length=2750715 Score = 235 bits (260), Expect = 7e-57 Identities = 1150/1796 (64%), Gaps = 58/1796 (3%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| |||||||| || |||||||| || | ||||| ||||| | ||||||||| | | Sbjct 2512114 CGGAGGTAGTACATACCAGTCTTGAGACCCTTCTTCCAGGCGTAGAAATGCATAGAGGTG 2512173 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 || |||| | |||| | || || | ||| | ||||||||||| || ||| Sbjct 2512174 AGTTTGGCAAAGTTTGGTTCGGCAATAAACACGTTGAACGACTGACTTTGGTCGATAAAG 2512233 Query 110483 -CGCCCCCGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTAATTTCCCAAACTGTGC 110540 | || | || | || ||||||||||||| | | | | ||| |||||| | | Sbjct 2512234 GCACCTCTGTCG-GCAGCCATATCAATGAGTGTACGTTGACG-AATCTCCCAAGCCGACT 2512291 Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600 || || | |||| || || |||||| || || || || | || ||| || | Sbjct 2512292 TGTACAGCTCTTTGAGGTCGTCGGGGATACCTTGGACGTTTTGTACCGA--CCCACGG-T 2512348 Query 110601 TCACCATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGA 110657 | | |||| | | |||||| || | ||| | ||||| | |||| || | || Sbjct 2512349 TAGCAATGATTTGGTTCTTCATTTCGGGAGTCCACAAACCAAGTGCCATGAGATCCTGGA 2512408 Query 110658 CGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTG 110717 | ||||||||||| | | |||||| || || | | | | | ||| ||||| Sbjct 2512409 GCAATTGCTTGTTGACGACGGTAAACTCGCCGGCCAAGACCTTGCGCGAGTAAATGTTGC 2512468 Query 110718 TTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 110777 | |||||||||||||| || ||||| || || | || |||| |||||| |||||||||| Sbjct 2512469 TAGTGTATGGTTCAAAACACTCATTGTTGCCGAGAATCTGTGAGGTGGATGCTGTTGGCA 2512528 Query 110778 TTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835 | ||||| | | || || |||||| ||||| | | ||| |||| |||||| | Sbjct 2512529 TGGGTGCGACGAGCAACGA--GTTACGTAGACCGTGTTTGACGATACGTTGTTTGAGAGC 2512586 Query 110836 ATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893 ||||||| | | || ||||| | | |||||||||||||| || || | ||| Sbjct 2512587 GGCCCAGTCCCAACGGGCAG-ATGGTTGGA-CATCCCACATGTCAAATTGTAGGATACCT 2512644 Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 110953 ||||| ||||| ||||| ||||||| || || | ||| | | || ||||||| ||| Sbjct 2512645 TGGGAAGCGGGCGAACCTGCAAAGGTCTCGTATGGACCGTCGCGCTCGGCCAATTGACAC 2512704 Query 110954 CTCGCCTCCAGGGATGCGTGATACATGGTTTC--AAAGATACGAGCATTCATCTCCTTGG 111011 || || ||||| || | || |||||||| || | | | || | | || Sbjct 2512705 GATGCGTCAAGGGAAGCATAGTAGATGGTTTCGGCAATCTCCTTG--TTGAGGACGGCGG 2512762 Query 111012 CTTCATCTGAATCAAAT-GCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACA 111070 | | ||| |||||| || || ||| ||||| || || || | |||||||| Sbjct 2512763 CAGCTGGTGAGTCAAATGGCATA-CGGAGAGCGATAAAGACGTCGGCCAAACCTTGAATT 2512821 Query 111071 CCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAA 111130 || | || | || | || ||||| || || || || || || || || ||| Sbjct 2512822 CCAATGCCGGTTGGACGATGACGCATGTTGGAACGACGAGCTTCTTCGACTGGGTAGAAA 2512881 Query 111131 TTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTT 111190 || | |||||||| ||| || || |||| || |||||||| || | Sbjct 2512882 TTACGGTCAATGATCTTGTTGAGGTTACGTGTAATGATACGGGTGATTTCGGCGAGATGG 2512941 Query 111191 TCATAATCAAAAG-TGCGA-GTC---------TCTTC-ATTGACATACTTTGGAAGGGCG 111238 | || ||||| | |||| | | || | |||||| ||||||| || || Sbjct 2512942 TTATGGTCAAATGAAGCGACGGCCGATGGCGAACTACGCTTGACAAACTTTGGTAGAGCA 2513001 Query 111239 ATTGATGCCAAATTGCAAACAGCCGTCTCATC--CTTATCTGTGTACTCTAAAATTTCTG 111296 || ||||| | |||||||| || || || || | ||||||| | ||| || | Sbjct 2513002 ATCGATGCAAGGTTGCAAACGGCTACTTCGTCGGCTGA--AGTGTACTGGATAATCTCGG 2513059 Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 |||| | ||||| | | ||| || || | ||||||||||| ||| | ||||| | Sbjct 2513060 TACAGAGATTGGAGCATTGAATAGTGCCAAGGTTCTTTTGGTTGGACTTTTCATTGCAAG 2513119 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 | ||||||||||| ||||| || || || ||||| | || || | || || || || Sbjct 2513120 CGTCCTTGTAGAGGATGTATGGGGTACCAGTCTCGATTTGCGAGTCGATGATGGCAAACC 2513179 Query 111417 AAACATC-GGCGGCTGGTACA-ATGGCGTTGGCCCGTCC----CTCCGCCTCGTACTTTG 111470 | | || | | || | || | || ||| ||| || | |||||| Sbjct 2513180 AGAGGTCTTGTGCCTTGACCACCTTACG--GGCTAATCCAGGAGTCTG-CTCGTAGGAAA 2513236 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGAC 111530 |||||| | |||| || || |||| | || || || | || ||||| Sbjct 2513237 GGTAGAGATCGCGGAACTTGTCGCCGTAGCAATCGGCCAATCCAGGAGCTTCGTTTGGAC 2513296 Query 111531 AGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | || | ||||| | || | || || || | ||| || || || | | ||| | Sbjct 2513297 AAAACAACGACCACTCGGCATTCTGTTCGACACGTTCCATAAAGAGATCGGATACCCAGA 2513356 Query 111591 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650 | | ||||||| || | || |||||| | ||| ||||| | | || | Sbjct 2513357 GTGCGTAAAAGAGGTCACGGGCACGCATCTCTTCTTTACCGTGGTTCTTTTTAAGGTCGA 2513416 Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC--- 111707 | ||||| | || |||| ||||||||| || || ||||| || | | ||||||| Sbjct 2513417 GAAACTCGAAAATGTCCGAGTGCCATGGTTCGAGGTAGACAGCAAACGCACCCTTTCTCT 2513476 Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 | ||| |||| | ||||| || || || ||||||| || || |||||||| | | Sbjct 2513477 TGCCTCCACCTTGGTCGACATAACGGGCAGTATCGTTAAACACACGTAGCATTGGCACCA 2513536 Query 111768 TACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 111826 ||| | || | | ||| || || || || ||| ||| ||| | | | || Sbjct 2513537 AACCGT-TGCTAGTACCGTTGGTTCCACGGATATAGGATCGTGCGGCACGGATCTTGTGC 2513595 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 | | || |||||||| || || | ||| || || | ||||| | | | || || || Sbjct 2513596 ACGGCGATACCAATACCACCGGCACTCTTGGAAATGAGGGCACATTGCTTGAGCGTGTCA 2513655 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG-- 111944 || ||||| | ||| ||||| ||||| | | ||||| ||||| ||||| || | Sbjct 2513656 TAAATACCTTCGATCGAGTCGTCCTTCATCTGCACGAGGAAACAACTCGACATTTGAGGC 2513715 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACA 112004 | |||||| ||||| || ||||||||||| || || || | || || | |||| Sbjct 2513716 GAGTTGGTG--CCAGCGTTAAAGAGGGTTGGGGTGGCATGCGTAAAGTAACGGTTTGACA 2513773 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064 | |||||| || || | | ||| |||||||| || |||||||| || | || ||| | Sbjct 2513774 ATTGGTCGTACGTGTCAATGGCAGCGTCAATGTCGTCACCGTGGATACCAAGTGAGACAC 2513833 Query 112065 GCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 112120 |||| |||| || || || ||| |||| || ||| || || || | |||| Sbjct 2513834 GCATCAACAAGTGTTGGGGACGTTCGATGATCATATCATTGACACGGTGCAAATAG 2513889 >seq5 Length=4166812 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/286 (67%), Gaps = 3/286 (1%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||||| || || || || | || || || ||| ||||| Sbjct 871853 GGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAGACC 871794 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||||||||| |||||||| | |||| | || | ||||| || ||| ||||| Sbjct 871793 TGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAAGAT 871734 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAA 122837 ||| || || ||||| || | | |||||||| || || || || | || Sbjct 871733 ACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGAGTTGG---TAAT 871677 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 |||| ||| ||||| | || || |||| | |||||| | ||||| || || | ||| Sbjct 871676 CCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATTAAA 871617 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAAT 122943 ||| ||| |||||| | || ||||| ||| | ||||| ||| Sbjct 871616 TAATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAAT 871571 >seq1 Length=2485436 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 182487 GGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCG 182546 |||||||| ||||| || | ||| | |||||||||||||| || |||||||||||||| Sbjct 2083950 GGCCAGAAATAGTGAATAAAATTAATAATGAGACCCTTGATATGTGAACCATCATTATCT 2084009 Query 182547 GCATCTGTCATAATCATAAGACGACCATAGCGAAGTTC 182584 ||| ||||||||||||| ||||| ||||| || Sbjct 2084010 TGATCAGTCATAATCATAATCTTTCCATAACGAAGGTC 2084047 >seq9 Length=911335 Score = 86.0 bits (94), Expect = 8e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 182679 TCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACG 182738 || |||||||| | |||||| ||||||||||| ||||| |||||||| | |||||| Sbjct 389190 TCACGAACATTGATGACTTTACCACGAAGTGGGAATACACCATAGTGATCCCAACCAACC 389249 Query 182739 ACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTA 182798 || || | ||| || || | || || || || ||||| || || | |||||| ||| Sbjct 389250 ACTGAAATACCAGCCGTTGCCAATGTCTTGGCAGAGTCACCTTCTGTTAAAATGAGTGTA 389309 Query 182799 CACTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTT 182845 || | | | |||| ||||| || || || ||||||||||| Sbjct 389310 CAGTCTTCTGATTTCTTGGTACCAGCAAAATTGGCTTCATCCAACTT 389356 >seq16 Length=3468650 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 27944 ATCAAAATAATTCGCTGTAATAATGTTTATGGTCCAAATCAATACCCGGAGAAACTCATT 28003 |||| || | ||| ||||||||||| |||||||||||||||| ||| |||||| | ||| Sbjct 1784449 ATCATCATTACTCGTTGTAATAATGTCTATGGTCCAAATCAATTCCCAGAGAAATTAATT 1784508 Query 28004 CCAAAGTTTATAA 28016 ||||| ||||||| Sbjct 1784509 CCAAAATTTATAA 1784521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031803740000