Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 206 3e-48 seq5 96.9 4e-15 seq1 89.7 6e-13 >seq3 Length=2750715 Score = 206 bits (228), Expect = 3e-48 Identities = 1128/1780 (63%), Gaps = 54/1780 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 |||||||||||||| || |||||||| |||| ||||||||| || | |||||| |||| Sbjct 2512114 CGGAGGTAGTACATACCAGTCTTGAGACCCTTCTTCCAGGCGTAGAAATGCATAGAGGTG 2512173 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | | |||| | || || | ||| | || ||| ||||| ||| Sbjct 2512174 AGTTTGGCAAAGTTTGGTTCGGCAATAAACACGTTGAACGACTGACTTTGGTCGATAAAG 2512233 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA----TTTCCCACACAGT 118012 || | || || ||||||||||| | | | |||| | ||||| | | Sbjct 2512234 GCACCTCTGTCGGCAGCCATATCAATGAG----TGTACGTTGACGAATCTCCCAAGCCGA 2512289 Query 118013 CCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGC 118072 | |||| || | || | || || |||||| | || ||||| | || |||| Sbjct 2512290 CTTGTACAGCTCTTTGAGGTCGTCGGGGATACCTTGGACGTTTTGTACCGACCCACGG-- 2512347 Query 118073 CTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTC 118129 || | |||| | | |||||| || | ||| | ||||| ||||||||| Sbjct 2512348 -TTAGCAATGATTTGGTTCTTCATTTCGGGAGTCCACAAACCAAGTGCCATGAGATCCTG 2512406 Query 118130 CACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGG---TGCGTCTCAGATAGAT 118186 | | ||||| ||||| || |||||| || || | | |||| || || || Sbjct 2512407 GAGCAATTGCTTGTTGACGACGGTAAACTCGCCGGCCAAGACCTTGCGCG--AG-TAAAT 2512463 Query 118187 ATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 118246 ||| | |||||||| ||||| ||||||||||| || | || || | ||||| ||||| Sbjct 2512464 GTTGCTAGTGTATGGTTCAAAACACTCATTGTTGCCGAGAATCTGTGAGGTGGATGCTGT 2512523 Query 118247 GGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAG 118306 ||||||||||| | ||| | |||||| ||||| | || || |||| ||||| Sbjct 2512524 TGGCATGGGTGCGACGAGCAACGAGTTACGTAGACCGTGTTTGACGATACGTTGTTTGAG 2512583 Query 118307 AGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 118366 |||| ||||||| | | || | | | |||||| ||||| || |||||||| Sbjct 2512584 AGCGGCCCAGTCCCAACGGGCAGATGGTTGGACATCCCACATGTCAAATTGTAGGATACC 2512643 Query 118367 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA 118426 |||||| || ||||| || |||| ||||| ||||| || || ||| ||||||| | Sbjct 2512644 TTGGGAAGCGGGCGAACCTGCAAAGGTCTCGTATGGACCGTCGCGCTCGGCCAATTGACA 2512703 Query 118427 GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGC 118486 || || |||| || | || || ||||| ||| || | | ||| Sbjct 2512704 CGATGCGTCAAGGGAAGCATAGTAGATGGTTTCGGCAATCTCCTTGTTGAGGACGGCGGC 2512763 Query 118487 --CTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544 || || || ||||| | | ||| ||||| || || || | |||||| | Sbjct 2512764 AGCTGGT--GAGTCAAATGGCATACGGAGAGCGATAAAGACGTCGGCCAAACCTTGAATT 2512821 Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAA 118604 || | ||| |||| ||||| | ||| || || ||||| || || || || ||| Sbjct 2512822 CCAATGCCGGTTGGACGATGACGCATGTTGGAACGACGAGCTTCTTCGACTGGGTAGAAA 2512881 Query 118605 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT---GAAGC 118661 || | || || | | | || || || || | | |||||||| || | Sbjct 2512882 TTACGGTCAATGATCTTGTTGAGGTTACGTGTAATGATACGGGTGATTTCGGCGAGATGG 2512941 Query 118662 TTTTCGT--AATCAAA--ACTGC-GA-GTCT--CTTCA-TTGACATACTTAGGAAGGGCG 118712 || | || ||| || || || || | | || | |||||| |||| || || || Sbjct 2512942 TTATGGTCAAATGAAGCGACGGCCGATGGCGAACTACGCTTGACAAACTTTGGTAGAGCA 2513001 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATC--CTTATCAGTGTACTCTATAATTTCCG 118770 || || || || || || || | || || || | |||||||| ||||| || | Sbjct 2513002 ATCGATGCAAGGTTGCAAACGGCTACTTCGTCGGCTGA--AGTGTACTGGATAATCTCGG 2513059 Query 118771 TGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 118830 | || | || || | | ||| ||||| | ||||||||| || |||||| || || | Sbjct 2513060 TACAGAGATTGGAGCATTGAATAGTGCCAAGGTTCTTTTGGTTGGACTTTTCATTGCAAG 2513119 Query 118831 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 118890 | |||||||| || |||||||| || || ||||| |||| || | || || || || Sbjct 2513120 CGTCCTTGTAGAGGATGTATGGGGTACCAGTCTCGATTTGCGAGTCGATGATGGCAAACC 2513179 Query 118891 AGACATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCC----TCTTCCTCGTACTTTG 118944 ||| || || || | | || |||| || ||| | ||||| Sbjct 2513180 AGAGGTCTTGTGCCTTGACCACCTTACG--GGCTAATCCAGGAGTCTGC-TCGTAGGAAA 2513236 Query 118945 TGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGC 119004 |||||| | |||| || || | || | | || || || | | ||| | Sbjct 2513237 GGTAGAGATCGCGGAACTTGTCGCCGTAGCAATCGGCCAATCCAGGAGCTTCGTTTGGAC 2513296 Query 119005 AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 119064 | || | ||||| | || || || || || | ||| ||||| || | | ||||| Sbjct 2513297 AAAACAACGACCACTCGGCATTCTGTTCGACACGTTCCATAAAGAGATCGGATACCCAGA 2513356 Query 119065 GCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 119124 | || | ||||| || || || ||||| | || || || | || | Sbjct 2513357 GTGCGTAAAAGAGGTCACGGGCACGCATCTCTTCTTTACCGTGGTTCTTTTTAAGGTCGA 2513416 Query 119125 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA- 119183 ||| || | || |||| |||||| ||||| ||||| || || | | ||||| | Sbjct 2513417 GAAACTCGAAAATGTCCGAGTGCCATGGTTCGAGGTAGACAGCAAACGCACCCTTTCTCT 2513476 Query 119184 --CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGA 119241 | ||| | |||| ||||| | ||||| ||||||| ||||| |||||||| | | Sbjct 2513477 TGCCTCCACCTTGGTCGACATAACGGGCAGTATCGTTAAACACACGTAGCATTGGCACCA 2513536 Query 119242 TACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGA 119301 ||| | | || || || || || ||| || ||| | || | ||| | Sbjct 2513537 AACCGTTGCTAGTACCGTTGGTTCCACGGATATAGGATCGTGCGGCACGGATCTTGTGCA 2513596 Query 119302 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 119361 | ||||||||||| || || | ||| || || | || || | | |||| || | | Sbjct 2513597 CGGCGATACCAATACCACCGGCACTCTTGGAAATGAGGGCACATTGCTTGAGCGTGTCAT 2513656 Query 119362 AGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGCTCGACATTTGAGGC 119420 | || || ||||||||||| |||| || ||| | |||||| || ||||||||||||||| Sbjct 2513657 AAATACCTTCGATCGAGTCGTCCTTCATCTGC-ACGAGGAAACAACTCGACATTTGAGGC 2513715 Query 119421 CTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATC 119480 | || |||||||| ||||| ||||| || || || | || || | |||| Sbjct 2513716 GAGTTGGTGCCAGCGTTAAAGAGGGTTGGGGTGGCATGCGTAAAGTAACGGTTTGACAAT 2513775 Query 119481 TTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 119540 | |||||| || || | | | ||| |||||| || ||||| ||||| | ||||| ||| Sbjct 2513776 TGGTCGTACGTGTCAATGGCAGCGTCAATGTCGTCACCGTGGATACCAAGTGAGACACGC 2513835 Query 119541 ATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGA 119580 || |||| || |||||| ||| || | ||| ||| || Sbjct 2513836 ATCAACAAGTGTTGGGGACGTTCGATGATCATATCATTGA 2513875 >seq5 Length=4166812 Score = 96.9 bits (106), Expect = 4e-15 Identities = 191/282 (68%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || |||||||| |||||||| ||| | || || || ||| ||||| Sbjct 871853 GGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAGACC 871794 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||||||| |||||||| | ||| || |||| ||| || ||| ||| ||||| Sbjct 871793 TGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAAGAT 871734 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 || || || || || || | | ||| || ||||| || ||| || || || Sbjct 871733 ACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGAGTTGGT---AAT 871677 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 ||| ||| ||||| | || ||||||| | ||| || | || | || || | ||| Sbjct 871676 CCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATTAAA 871617 Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTAT 130296 | | |||| ||||| ||||| ||| || || |||| || Sbjct 871616 TAATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAAT 871575 >seq1 Length=2485436 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 179745 TGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATC 179804 ||||||||| ||||| || | ||| | ||||||||||| || ||||||||||| ||||| Sbjct 2083949 TGGCCAGAAATAGTGAATAAAATTAATAATGAGACCCTTGATATGTGAACCATCATTATC 2084008 Query 179805 CGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTC 179843 ||| ||||||||||||| | ||||| ||||| || Sbjct 2084009 TTGATCAGTCATAATCATAATCTTTCCATAACGAAGGTC 2084047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435006739000