Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 214 2e-50 seq5 125 8e-24 >seq3 Length=2750715 Score = 214 bits (236), Expect = 2e-50 Identities = 1114/1752 (64%), Gaps = 58/1752 (3%) Strand=Plus/Minus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 || |||| ||||| || | | ||||| || || || |||||||| ||| | | || | Sbjct 2513845 ACTTGTTGATGCGTGTCTCACTTGGTATCCACGGTGACGACATTGACGCTGCCATTGACA 2513786 Query 104289 CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTG 104348 | |||||| | |||| | || || | || || || ||||||||||| || |||| Sbjct 2513785 CGTACGACCAATTGTCAAACCGTTACTTTACGCATGCCACCCCAACCCTCTTTAACGCTG 2513726 Query 104349 GTACACCAAGACCCC--AAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAAT 104406 | |||||| | || ||||||| ||||| ||||| | | ||||| ||||| || Sbjct 2513725 G--CACCAACTCGCCTCAAATGTCGAGTTGTTTCCTCGTGCAGATGAAGGACGACTCGAT 2513668 Query 104407 CAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTAT 104466 | | ||||| |||| || || | | | ||||| | || || ||| | || || ||||| Sbjct 2513667 CGAAGGTATTTATGACACGCTCAAGCAATGTGCCCTCATTTCCAAGAGTGCCGGTGGTAT 2513608 Query 104467 TGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGT-C 104525 ||| || | | || | | | ||| ||| ||| || || || || ||| | Sbjct 2513607 TGGTATCGCCGTGCACAAGATCCGTGCCGCACGATCCTATATCCGTGGAACCAACGGTAC 2513548 Query 104526 AATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATC 104585 | || | ||| | | |||||||| || || ||||||| || || || ||||| | | Sbjct 2513547 TAGCA-ACGGTTTGGTGCCAATGCTACGTGTGTTTAACGATACTGCCCGTTATGTCGACC 2513489 Query 104586 AAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATA 104642 ||| ||| | ||||||| | | || ||||| || || ||||||||| |||| | Sbjct 2513488 AAGGTGGAGGCAAGAGAAAGGGTGCGTTTGCTGTCTACCTCGAACCATGGCACTCGGACA 2513429 Query 104643 TCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATC 104702 | | ||||| || || | ||||| ||| | || ||| ||| ||| || | Sbjct 2513428 TTTTCGAGTTTCTCGACCTTAAAAAGAACCACGGTAAAGAAGAGATGCGTGCCCGTGACC 2513369 Query 104703 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 104762 |||| | ||| |||||| | | |||||||| ||| | | || || ||| || | | | Sbjct 2513368 TCTTTTACGCACTCTGGGTATCCGATCTCTTTATGGAACGTGTCGAACAGAATGCCGAGT 2513309 Query 104763 GGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 104822 |||| | ||||||||| || | || ||||| | ||||| | || || |||| Sbjct 2513308 GGTCGTTGTTTTGTCCAAACGAAGCTCCTGGATTGGCCGATTGCTACGGCGACAAGTTCC 2513249 Query 104823 AAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-ACGGTGC-CA--GCT 104878 | || ||| |||||| | || || | || | |||| || || Sbjct 2513248 GCGATCTCTACCTTTCCTACGAGCA-GACTCCTGGATTAGCCCGTAAGGTGGTCAAGGCA 2513190 Query 104879 GCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTT 104938 || | ||| || || || | || |||| |||||||||||| |||||||| || Sbjct 2513189 CAAGACCTCTGGTTTGCCATCATCGACTCGCAAATCGAGACTGGTACCCCATACATCCTC 2513130 Query 104939 TACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAAT-TTGGGTGTGATCAAGAGTTC 104997 ||||| ||||| || || ||||| || |||||||| |||| | |||| | || Sbjct 2513129 TACAAGGACGCTTGCAATGAAAAGTCCAACCAAAAGAACCTTGGCACTATTCAAT-GCTC 2513071 Query 104998 CAATCTCTGTACAGAAATCTTGGAATTTAC---AGACAAAGATGAGACGGCTGTGTGTAA 105054 |||||||||||| || || | | | || || | | || | || || || || Sbjct 2513070 CAATCTCTGTACCGAGATTATCCAGTACACTTCAGCCGACGAAGTA---GCCGTTTGCAA 2513014 Query 105055 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCC-AGA--GACAAAGAC--------- 105102 ||| ||||| || ||||| || |||| ||| | | || | || | | Sbjct 2513013 CCTTGCATCGATTGCTCTACCAAAGTTTGTCAAGCGTAGTTCGCCATCGGCCGTCGCTTC 2512954 Query 105103 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 |||||| || | | ||| |||| | || | | || ||||| |||| | Sbjct 2512953 ATTTGACCATAACCATCTCGCCGAAATCACCCGTATCATTACACGTAACCTCAACAAGAT 2512894 Query 105163 TATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 ||||| | ||||| ||||| || || |||||| || || ||| | || ||||| Sbjct 2512893 CATTGACCGTAATTTCTACCCAGTCGAAGAAGCTCGTCGTTCCAACATGCGTCATCGTCC 2512834 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGC-ATTTG 105281 || || | || |||| ||| | || || || || || | | || | || ||||| Sbjct 2512833 AACCGGCATTGGAATTCAAGGTTTGGCCGACGTCTTTAT-CGCTCTCCGTATGCCATTTG 2512775 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTT--GAGACCATGTATCACGCCGC 105339 | || | || | |||| | | | ||| || ||||| || | || | Sbjct 2512774 ACTCACCAGCTGCCGCCGTCCTCAA--CAAGGAGATTGCCGAAACCATCTACTATGCTTC 2512717 Query 105340 TCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 ||||| || | | ||||| ||| || |||||||| || ||||||| ||||| Sbjct 2512716 CCTTGACGCATCGTGTCAATTGGCCGAGCGCGACGGTCCATACGAGACCTTTGCAGGTTC 2512657 Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC-- 105457 || ||||| ||||| | || |||||||| |||||||| | | |||| || | | Sbjct 2512656 GCCCGCTTCCCAAGGTATCCTACAATTTGACATGTGGGATGTCCA-ACCAT-CTGCCCGT 2512599 Query 105458 TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517 | ||||||| |||||||| |||| ||| | | ||||| |||||| | ||| Sbjct 2512598 TGGGACTGGGCCGCTCTCAAACAACGTATCGTCAAACACGGTCTACGTAACTCGTTGCTC 2512539 Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577 | || || ||||||||||| |||||| |||| || | || || ||||| || |||||| Sbjct 2512538 GTCGCACCCATGCCAACAGCATCCACCTCACAGATTCTCGGCAACAATGAGTGTTTTGAA 2512479 Query 105578 CCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 || ||||| | ||||| || | | | | | || || |||||| | |||||| Sbjct 2512478 CCATACACTAGCAACATTTACTCGCGCAAGGTCTTGGCCGGCGAGTTTACCGTCGTCAAC 2512419 Query 105638 AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC-- 105695 ||||| | | | || |||| | ||||| | ||| | || |||||| | | Sbjct 2512418 AAGCAATTGCTCCAGGATCTCATGGCACTTGGTTTGTGGACTCCCGAAATGAAGAACCAA 2512359 Query 105696 -TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAG 105754 |||| | || |||| || | ||||| | | ||| || | || | || Sbjct 2512358 ATCATTGCTAA---CCGTGGGTCGGTACAAAACGTCCAAGGTATCCCCGACGACCTCAAA 2512302 Query 105755 AAGTTGTACCGCACAGTTTGGGAAA----TCAAGATGAAGGATGTCATTGACATGGCCGC 105810 || ||||| | | |||||| | |||| | | ||||||| ||||| || Sbjct 2512301 GAGCTGTACAAGTCGGCTTGGGAGATTCGTCAACGTACA----CTCATTGATATGGCTGC 2512246 Query 105811 AGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAAC 105870 || | ||| ||| || || |||||||| | || | || || | |||| Sbjct 2512245 CGACAGAGGTGCCTTTATCGACCAAAGTCAGTCGTTCAACGTGTTTATTGCCGAACCAAA 2512186 Query 105871 GATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGAT 105930 | |||| ||| | |||||||| | ||| ||||||||||||||||| || || || Sbjct 2512185 CTTTGCCAAACTCACCTCTATGCATTTCTACGCCTGGAAGAAGGGTCTCAAGACTGGTAT 2512126 Query 105931 GTATTACCTCCG 105942 ||| |||||||| Sbjct 2512125 GTACTACCTCCG 2512114 >seq5 Length=4166812 Score = 125 bits (138), Expect = 8e-24 Identities = 184/260 (71%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 94684 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGT 94743 |||||||| || | ||| || ||| | ||| | || || |||| |||| ||| Sbjct 871584 TATATTAAAAATCCAGATGAAAAAAAGGTATTATTTAATGCAATTGAAACTATTCCATGT 871643 Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCT 94803 | | || ||||| || |||||| ||| ||| || || || || || ||||| Sbjct 871644 GTAAAGAAAAAAGCTGACTGGGCTTTGAGATGGATT---ACCAACTCCAAGTCGTTTGCC 871700 Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 || || | | || ||||| ||||| |||||||| ||| |||| ||||| | Sbjct 871701 GAACGTTTGGTAGCTTTTGCCGCCGTTGAAGGTATCTTTTTCAGTGGTAGTTTCTGTTCG 871760 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | ||||||||||||||| |||||||||||||||||| ||| ||||||||| | ||| Sbjct 871761 ATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCAGGTCTCACCTTTTCCAACGAGTTGATC 871820 Query 94924 TCTCGTGACGAGGGACTCCA 94943 ||||||||| || ||||| Sbjct 871821 AGTCGTGACGAAGGTCTCCA 871840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260617731000