Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 273 2e-68 seq5 96.9 4e-15 >seq3 Length=2750715 Score = 273 bits (302), Expect = 2e-68 Identities = 403/559 (72%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTA 53250 || ||||| ||| | | |||||||||||||||||| | |||| || | ||| ||||| Sbjct 2513840 TTGATGCGTGTCTCACTTGGTATCCACGGTGACGACATTGACGC-TGCCATTGACACGTA 2513782 Query 53251 CGACTTAATGAGCCAAAAGT-ACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 |||| | || | || || |||||||||| ||||| |||||||| || |||||||| | Sbjct 2513781 CGACCAATTGT-CAAACCGTTACTTTACGCATGCCACCCCAACCCTCTTTAACGCTGGCA 2513723 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || ||||| |||||||| || ||||| ||| ||||||||| ||||||||||| | Sbjct 2513722 CCAACTCGCCTCAAATGTCGAGTTGTTTCCTCGTGCAGATGAAGGACGACTCGATCGAAG 2513663 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | || || || ||||||||| | ||||||| ||| |||||| | | |||||||| |||| Sbjct 2513662 GTATTTATGACACGCTCAAGCAATGTGCCCTCATTTCCAAGAGTGCCGGTGGTATTGGTA 2513603 Query 53430 TC-CACTGCTCGAACGTCCGTG-CGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCG 53486 || | ||| | || |||||| || ||| | | | ||| || || ||||| Sbjct 2513602 TCGCCGTGCAC-AAGATCCGTGCCGCACG--ATCCTATATCCGTGGAACCAACGGTACTA 2513546 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 | | || | ||||| ||||| || || || ||| | || ||||| || ||| |||| | Sbjct 2513545 GCAACGGTTTGGTGCCAATGCTACGTGTGTTTAACGATACTGCCCGTTATGTCGACCAAG 2513486 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 |||| || ||| | ||||| |||| || |||||||||| || |||||| | |||||| Sbjct 2513485 GTGGAGGCAAGAGAAAGGGTGCGTTTGCTGTCTACCTCGAACCATGGCACTCGGACATTT 2513426 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGT 53666 | ||||||||||| || ||| || ||| | ||||||||||| ||||||||| | Sbjct 2513425 TCGAGTTTCTCGACCTTAAAAAGAACCACGGTAAAGAAGAGATGCGTGCCCGTGACCTCT 2513366 Query 53667 TTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 || || || ||| | | || ||||| ||| || || || || | | ||||||| Sbjct 2513365 TTTACGCACTCTGGGTATCCGATCTCTTTATGGAACGTGTCGAACAGAATGCCGAGTGGT 2513306 Query 53727 ACCTGATGTGCCCGAACGA 53745 || | || || ||||| Sbjct 2513305 CGTTGTTTTGTCCAAACGA 2513287 >seq5 Length=4166812 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808 |||||| || ||| ||| ||||| || | || ||||| || || ||||| | || | Sbjct 871853 GGCAAAGTCGCAATG-GAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAGAC 871795 Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868 | ||||| || ||||||||||| | ||||||||| | |||||| ||||||||| |||| Sbjct 871794 CTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAAGA 871735 Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACG--GTGCATCGGAAGTCAT 74926 | ||||| || ||||| || || | |||| || |||| || | | || || Sbjct 871734 TACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGA--GTTGGTAAT 871677 Query 74927 CCAAGTCTGAGCCCATTCAGCTTTT 74951 ||| || |||||| ||||||||| Sbjct 871676 CCATCTCAAAGCCCAGTCAGCTTTT 871652 Score = 93.3 bits (102), Expect = 5e-14 Identities = 130/182 (71%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 75142 TGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCAT 75201 |||| || || || ||||| |||||||| |||| ||| | ||||||||||| || |||| Sbjct 871374 TGACAATACCATCAGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCAT 871315 Query 75202 CGTCAGTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCG 75258 |||| | | | || ||||| || || | || | |||||||||||||| ||| | | Sbjct 871314 TGTCATTCAATTTATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTG 871255 Query 75259 TCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAA 75318 |||| || || | |||||||| |||| | ||| | || | || || ||||| | Sbjct 871254 TCCAAAAGCTTGCCTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGA 871195 Query 75319 AT 75320 || Sbjct 871194 AT 871193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215828995000