Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq21 98.7 7e-16 seq24 86.0 4e-12 >seq21 Length=1919465 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||| | ||||| || ||||| | || || ||| | | Sbjct 1444205 ATGCAAATTTTTGTAAAAACTTTAACTGGTAAGACCATTACCTTGGAGGTTGAAGGTTCT 1444264 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || ||||| || || ||||| |||||| |||| || || Sbjct 1444265 GACACTATTGAAAATGTCAAGACCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAA 1444324 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | ||||||||||| ||||||||||| |||| | | ||||| ||||||||| Sbjct 1444325 CAACGTCTCATTTTTGCCGGTAAACAATTGGAAGACGGCAGAACTTTGTCGGATTACAAC 1444384 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| || |||| | ||| | || | ||| | ||||| || Sbjct 1444385 ATTCAAAAGGAATCCACTCTCCATCTTGTCCTCCGTCTCCGTGGTGG 1444431 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || | || |||||| | || Sbjct 1352152 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACAATCACCCTCGAAGTCGAAGGATCC 1352211 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || ||||| || || ||||| |||||| |||| || || Sbjct 1352212 GACACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAA 1352271 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | ||||| ||||| || |||||||| || |||| ||| | | |||||||| ||| Sbjct 1352272 CAAAGATTAATCTTTGCAGGTAAACAATTAGAAGACGGACGTACTCTTTCCGATTATAAC 1352331 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| | ||| | || | ||| | ||||| || Sbjct 1352332 ATCCAAAAGGAATCAACTCTCCATCTCGTCCTCCGTCTCCGTGGTGG 1352378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| |||| || || ||||| | ||||||||||| ||||||||||| Sbjct 1444982 GACAAGGAAGGTATTCCACCTGATCAACAACGTCTCATTTTTGCCGGTAAACAATTGGAA 1445041 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | ||||| ||||||||||| ||||| || |||| | ||| | || | Sbjct 1445042 GACGGCAGAACTTTGTCGGATTACAACATTCAAAAGGAATCCACTCTCCATCTCGTCCTT 1445101 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 1445102 CGTCTCCGTGGTGG 1445115 >seq24 Length=3408800 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || || || ||||| || || || | || |||||| | || Sbjct 192865 ATGCAAATTTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTCGAAGTCGAAGGATCC 192806 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || ||||| || || ||||| |||||| | || || || Sbjct 192805 GACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATCAA 192746 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | || |||||||| |||||||| || |||| | | ||||| || |||||| Sbjct 192745 CAACGTCTTATCTTTGCCGGTAAACAATTAGAAGACGGCAGAACTTTGTCGGACTACAAC 192686 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || |||| | ||| | || | ||| | ||||| || Sbjct 192685 ATCCAAAAGGAATCCACTCTCCATCTCGTCCTCCGTCTCCGTGGTGG 192639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862291573175