Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq21 125 5e-24 seq5 98.7 7e-16 seq24 93.3 3e-14 >seq21 Length=1919465 Score = 125 bits (138), Expect = 5e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| || || || |||||||| |||||||| | Sbjct 1444889 ATGCAAATCTTTGTAAAGACCCTCACTGGTAAGACCATCACTCTTGAAGTTGAGGGATCT 1444948 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || || || | || ||||| |||||| | || || ||||| Sbjct 1444949 GACACCATTGAGAATGTCAAGACCAAGA-TTCAAGACAAGGAAGGTATTCCACCTGATCA 1445007 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || |||||||| |||||| ||||||||| | ||||| |||||||| Sbjct 1445008 ACAACGTCTCATTTTTGCCGGTAAACAATTGGAAGACGGCAGAACTTTGTCGGATTACAA 1445067 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || ||||| Sbjct 1445068 CATTCAAAAGGAATCCAC 1445085 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| | || || || || || || | || ||||| | Sbjct 1444205 ATGCAAATTTTTGTAAAAACTTTAACTGGTAAGACCATTACCTTGGAGGTTGAAGGTTCT 1444264 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | | || || || | | ||||| |||||| | || || ||||| Sbjct 1444265 GACACTATTGAAAATGTCAAGACCAAGA-TCCAAGACAAGGAAGGTATTCCACCTGATCA 1444323 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || |||||||| |||||| ||||||||| | ||||| |||||||| Sbjct 1444324 ACAACGTCTCATTTTTGCCGGTAAACAATTGGAAGACGGCAGAACTTTGTCGGATTACAA 1444383 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || ||||| Sbjct 1444384 CATTCAAAAGGAATCCAC 1444401 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || |||||||| ||||| || | Sbjct 1444433 ATGCAAATCTTTGTCAAGACATTGACCGGCAAGACCATCACTCTTGAAGTCGAGGGATCT 1444492 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || || || | | ||||| ||||| | || || ||||| Sbjct 1444493 GACACTATCGAGAATGTCAAGACCAAGA-TCCAAGACAAGGAAGGAATTCCACCTGATCA 1444551 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||| || || ||||||| | ||||| |||||||| Sbjct 1444552 ACAACGTCTTATCTTTGCTGGCAAGCAGCTCGAAGACGGCAGAACTTTGTCGGATTACAA 1444611 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || ||||| Sbjct 1444612 CATTCAAAAGGAATCCAC 1444629 >seq5 Length=4166812 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 |||||||||| ||||||||||| ||||| || || || || || | || || || Sbjct 207382 AAATGCAGATCTTCGTTAAAACACTCACAGGTAAGACCATTACCTTAGAGGTAGAGGGTT 207441 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 | |||||| | |||| | || || || ||||| |||||| | || || || | Sbjct 207442 CCGACACTATCGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCTGACC 207501 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||| | || |||||||| || ||||| ||||||| || || | ||| |||| Sbjct 207502 AACAACGTCTTATCTTTGCCGGTAAGCAACTCGAAGACGGTCGTACCCTCTCCGACTACA 207561 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| ||||| || Sbjct 207562 ACATCCAAAAGGAGTCTAC 207580 >seq24 Length=3408800 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || ||||| | ||||| || | Sbjct 192637 ATGCAAATCTTTGTCAAGACATTGACCGGCAAGACCATCACCTTGGAAGTCGAAGGTTCT 192578 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| | | || || || | || ||||| |||||| | || || ||||| Sbjct 192577 GACACTATCGAAAATGTCAAGACCAAGA-TTCAAGACAAGGAAGGTATCCCACCTGATCA 192519 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || |||||||| |||||| | ||||||| || ||| | ||||||||| Sbjct 192518 ACAACGTCTCATCTTTGCCGGTAAACAATTAGAAGACGGCCGAACTCTTTCCGATTACAA 192459 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || || || Sbjct 192458 CATCCAAAAGGAATCTAC 192441 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || || |||||||| ||||| || | Sbjct 192180 ATGCAGATCTTTGTCAAGACATTGACTGGTAAGACCATCACTCTTGAAGTCGAAGGATCC 192121 Query 23671 GACACTGTTGAAATA-TTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| |||| || || | || ||||| |||||| | || || ||||| Sbjct 192120 GACACCATTGAAAACGTTAAGACCAAGA-TTCAAGACAAGGAAGGTATCCCACCTGATCA 192062 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || |||||||| |||||| | || || | | || | |||||||| Sbjct 192061 ACAACGTCTTATCTTTGCCGGTAAACAATTAGAGGATGGCAGAACCCTCTCGGATTACAA 192002 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || ||||| Sbjct 192001 CATTCAAAAGGAATCCAC 191984 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||| | || || ||||| || || | ||||| || | | Sbjct 193094 AATGCAAATCTTTGTTAAAACATTAACAGGTAAAACCATTACCTTGGAAGTAGAAGGCTC 193035 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | |||| | | || || || | || ||||| |||||| | || || |||| Sbjct 193034 TGACACTATCGAAAATGTCAAGACCAAGA-TTCAAGACAAGGAAGGTATCCCACCTGATC 192976 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||| | || || ||||| |||||| | || || | | || | ||||||| Sbjct 192975 AACAACGTCTCATTTTCGCCGGTAAACAATTAGAGGATGGTAGAACCCTCTCGGATTACA 192916 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| || ||||| Sbjct 192915 ACATCCAAAAGGAATCCAC 192897 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| || || || |||||||| ||||| || | Sbjct 192409 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAGACCATCACTCTTGAAGTCGAGGGATCT 192350 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAG-AAGGTGTACCGCCAGATC 23728 ||||| |||||| | | || || || | | ||||| | ||||| | || || |||| Sbjct 192349 GACACCATTGAAAATGTCAAGACCAAGA-TCCAAGACAAGGGAAGGTATCCCACCTGATC 192291 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||| | || || ||||| |||||| | || || | | || | ||||||| Sbjct 192290 AACAACGTCTCATTTTCGCCGGTAAACAATTAGAGGATGGTAGAACCCTCTCGGATTACA 192231 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| || ||||| Sbjct 192230 ACATCCAAAAGGAATCCAC 192212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009497012700