Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 176 6e-39 seq3 122 1e-22 >seq5 Length=4166812 Score = 176 bits (194), Expect = 6e-39 Identities = 222/302 (74%), Gaps = 5/302 (2%) Strand=Plus/Minus Query 48429 CTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCT 48488 ||||| |||| || |||||||||||||| || || ||||| || || |||||||| ||| Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 48489 TCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAA-TTCTCATTTACTATTCCATC 48547 || | || || || || | ||| | | | | ||| || || || || || ||||| Sbjct 871420 TCAGGTATTTGAACTTCAG-ACATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATC 871362 Query 48548 ACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT 48607 | ||||| ||||| || ||||||| || ||||| | ||| ||| | ||| ||| Sbjct 871361 AGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCATTGTCATTCAATTT 871302 Query 48608 ATTC---CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGC 48664 |||| || || |||| ||| ||| | ||| | ||||| ||||||||||| ||| Sbjct 871301 ATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTGC 871242 Query 48665 CTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 |||||| ||||||||||||||||| ||||| | |||| |||||||| | ||||||||| Sbjct 871241 CTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATCT 871182 Query 48725 AT 48726 || Sbjct 871181 AT 871180 Score = 141 bits (156), Expect = 1e-28 Identities = 209/294 (71%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || ||||| |||||||| || | ||| || || ||||| ||||| ||||| Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| ||||| || ||||| || ||||||||||| || | |||| ||| || || Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAA 871737 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT--CGTTGTGT 48317 || ||||| ||||| ||||| || || | || | || | ||| |||| Sbjct 871736 GATACCTTCAACGGCGGCAAAAGC--TACCAAACGTTCGGCAAACGACTTGGAGTTGGTA 871679 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| | ||||| ||||| || ||||||||||| || || ||||| || |||||| Sbjct 871678 ATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATTA 871619 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTA 48431 || | | |||||||||| || ||||| || ||||| ||||| | |||| Sbjct 871618 AATAATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 >seq3 Length=2750715 Score = 122 bits (134), Expect = 1e-22 Identities = 550/866 (64%), Gaps = 13/866 (2%) Strand=Plus/Plus Query 77678 AGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTC 77737 ||| || ||||| || || ||||| ||||| || | || | || || || ||||| Sbjct 2512998 AGCAATCGATGCAAGGTTGCAAACGGCTACTTCGTCGGCTGAAGTGTACTGGATAATCTC 2513057 Query 77738 GGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA 77797 |||||| ||||| |||| |||||||| || || | ||||||| ||||| |||||| Sbjct 2513058 GGTACAGAGATTGGAGCATTGAATAGTGCCAAGGTTCTTTTGGTTGGACTTTTCATTGCA 2513117 Query 77798 TGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTT 77857 | |||||| || || || | || || || || || || || || ||||| || | Sbjct 2513118 AGCGTCCTTGTAGAGGATGTATGGGGTACCAGTCTCGATTTGCGAGTCGATGATGGCAAA 2513177 Query 77858 CCAGACGACTCTAGCTTTTATCA---TAGATTTGTATC---GCCTCT-CTCTTTCATATT 77910 ||||| | || || || | || || ||| | ||| ||| | | Sbjct 2513178 CCAGAGGTCTTGTGCCTTGACCACCTTACGGGCTAATCCAGGAGTCTGCTCGTAGGAAAG 2513237 Query 77911 GAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTG 77970 | | || || | || | || || | ||| |||||||||| ||| |||| Sbjct 2513238 GTAGAGATCGCGG----AACTTGTCGCCGTAGCAATCGGCCAATCCAGGAGCTTCGTTTG 2513293 Query 77971 GGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCC 78030 | || | ||| ||||| || ||| | | || |||| |||||||||||| | || || Sbjct 2513294 GACAAAACAACGACCACTCGGCATTCTGTTCGACACGTTCCATAAAGAGATCGGATACCC 2513353 Query 78031 ATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGAT 78090 | || || ||| || || |||| | ||||| || || ||||||||||| | Sbjct 2513354 AGAGTGCGTAAAAGAGGTCACGGGCACGCATCTCTTCTTTACCGTGGTTCTTTTTAAGGT 2513413 Query 78091 CGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTC 78150 |||||||||| | ||| || || ||||||||||| || || | || | | || || Sbjct 2513414 CGAGAAACTCGAAAATGTCCGAGTGCCATGGTTCGAGGTAGACAGCAAACGCACCCTTTC 2513473 Query 78151 GTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAA 78210 || || || || || | ||| | ||| || | ||| | || | | |||||| | Sbjct 2513474 TCTTGCCTCCACCTTGGTCGACATAACGGGCAGTATCGTTAAACACACGTAGCATTGGCA 2513533 Query 78211 TAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTAC 78270 | |||||| || || || |||||| ||||| || || || || || Sbjct 2513534 CCAAACCGTTGCTAGTACCGTTGGTTCCACGGATATAGGATCGTGCGGCACGGATCTTGT 2513593 Query 78271 TAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTAT 78330 | || || || || || || || |||| || || || || || | || | || | Sbjct 2513594 GCACGGCGATACCAATACCACCGGCACTCTTGGAAATGAGGGCACATTGCTTGAGCGTGT 2513653 Query 78331 CGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGAT 78390 | || ||||| || || ||| ||| |||| | | || ||||| || ||||||||| Sbjct 2513654 CATAAATACCTTCGATCGAGTCGTCCTTCATCTGCACGAGGAAACAACTCGACATTTGAG 2513713 Query 78391 GATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAA 78450 | || || || ||||| | || || | ||||||||||| | | || | Sbjct 2513714 GCGAGTTGGTGCCAGCGTTAAAGAGGGTTGGGGTGGCATGCGTAAAGTAACGGTTTGACA 2513773 Query 78451 GTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACA 78509 | | | ||| || ||||| || | || ||||| || | || || || | | ||| Sbjct 2513774 ATTGGTCGTACGTGTCAATGGCAGCGTCAATGTCGTCACCG-TGGATACCAAGTGAGACA 2513832 Query 78510 CGCATCAACATATGCTGAGGTCTTTC 78535 |||||||||| || || || | ||| Sbjct 2513833 CGCATCAACAAGTGTTGGGGACGTTC 2513858 Score = 102 bits (112), Expect = 1e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 ||||| || |||||||||||||| || |||||| |||| ||||||||||||| Sbjct 2512111 GTACGGAGGTAGTACATACCAGTCTTGAGACCCTTCTTCCAGGCGTAGAAATGCATAGAG 2512170 Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931 || ||||||| | | | || ||||| ||| | || | |||||||||||| ||||| Sbjct 2512171 GTGAGTTTGGCAAAGTTTGGTTCGGCAATAAACACGTTGAACGACTGACTTTGGTCGATA 2512230 Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAA 76985 || || ||||| || || ||||| | || | || |||| |||| |||||| Sbjct 2512231 AAGGCACCTCTGTCGGCAGCCATATCAATGAGTGTACGTTGACGAATCTCCCAA 2512284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668582916000