Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 170 3e-37 seq3 109 8e-19 >seq5 Length=4166812 Score = 170 bits (188), Expect = 3e-37 Identities = 221/302 (73%), Gaps = 5/302 (2%) Strand=Plus/Minus Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 ||||| |||| |||||||| |||||||| || || ||||| || || |||||||||||| Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAA-TTCTCATTCACTATTCCATC 47036 |||| || || || || | ||| | | | | ||| || || || || || ||||| Sbjct 871420 TCAGGTATTTGAACTTCAG-ACATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATC 871362 Query 47037 ACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT 47096 | ||||| ||||| |||||||||| || ||||| | ||||| | | ||| ||| Sbjct 871361 AGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCATTGTCATTCAATTT 871302 Query 47097 ATTC---CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 |||| || || |||| ||| ||| | ||| | ||||| |||||||| || || Sbjct 871301 ATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTGC 871242 Query 47154 CTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCT 47213 |||||| ||||||||||||||||| ||||| ||||| || || || | ||||||||| Sbjct 871241 CTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATCT 871182 Query 47214 AT 47215 || Sbjct 871181 AT 871180 Score = 156 bits (172), Expect = 6e-33 Identities = 212/294 (72%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||| || ||||| || ||||| || | ||| || || ||||| ||||| ||||| Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 || ||||| || |||||||| ||||||||||| || | |||| ||| || || Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAA 871737 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTATGA 46806 || ||||| || || || || || || | | || | | ||| | | || | Sbjct 871736 GATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGAG--TTGGTA 871679 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| || |||||| ||||| |||||||||||||| || || ||||| || |||||| Sbjct 871678 ATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATTA 871619 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920 || | | ||||||||||| || ||||| ||||||||| ||||| | |||| Sbjct 871618 AATAATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 >seq3 Length=2750715 Score = 109 bits (120), Expect = 8e-19 Identities = 378/587 (64%), Gaps = 2/587 (0%) Strand=Plus/Plus Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 |||| |||||| ||| || ||||| | ||| |||||||| ||| | | || |||| Sbjct 2513273 CCAATCCAGGAGCTTCGTTTGGACAAAACAACGACCACTCGGCATTCTGTTCGACACGTT 2513332 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664 |||||||||||| | || ||| || || ||| || || |||| | ||||| | Sbjct 2513333 CCATAAAGAGATCGGATACCCAGAGTGCGTAAAAGAGGTCACGGGCACGCATCTCTTCTT 2513392 Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724 | || ||||||||||| || || ||||| | ||| || || ||||||||||| || | Sbjct 2513393 TACCGTGGTTCTTTTTAAGGTCGAGAAACTCGAAAATGTCCGAGTGCCATGGTTCGAGGT 2513452 Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784 | | || | ||||| || || || || || || | ||| | |||||| | | Sbjct 2513453 AGACAGCAAACGCACCCTTTCTCTTGCCTCCACCTTGGTCGACATAACGGGCAGTATCGT 2513512 Query 76785 TATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAAC 76844 || | || | | |||||| | | ||||| ||||| || |||||| ||||| Sbjct 2513513 TAAACACACGTAGCATTGGCACCAAACCGTTGCTAGTACCGTTGGTTCCACGGATATAGG 2513572 Query 76845 TTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA 76904 || ||||| || || | | | || || || || || | || || || | Sbjct 2513573 ATCGTGCGGCACGGATCTTGTGCACGGCGATACCAATACCACCGGCACTCTTGGAAATGA 2513632 Query 76905 GAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAA 76964 | ||||| | || | |||||||| || || || || || ||| |||| | | | Sbjct 2513633 GGGCACATTGCTTGAGCGTGTCATAAATACCTTCGATCGAGTCGTCCTTCATCTGCACGA 2513692 Query 76965 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024 | ||||| || ||||||||| | || || || ||||| | || || | |||| Sbjct 2513693 GGAAACAACTCGACATTTGAGGCGAGTTGGTGCCAGCGTTAAAGAGGGTTGGGGTGGCAT 2513752 Query 77025 GAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CCAT 77083 | || || | | || | | | | ||| || ||||| | || || || || || Sbjct 2513753 GCGTAAAGTAACGGTTTGACAATTGGTCGTACGTGTCAATGGCAGCGTCAATGTCGTCAC 2513812 Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 | || || || | | |||||||||||||| || || || ||||| Sbjct 2513813 CG-TGGATACCAAGTGAGACACGCATCAACAAGTGTTGGGGACGTTC 2513858 Score = 102 bits (112), Expect = 1e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 75407 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 75466 ||||| || |||||||||||||| || |||||| |||| ||||||||||||| Sbjct 2512111 GTACGGAGGTAGTACATACCAGTCTTGAGACCCTTCTTCCAGGCGTAGAAATGCATAGAG 2512170 Query 75467 GTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 75526 || ||||||| | | | || ||||| ||| | || | |||||||||||| ||||| Sbjct 2512171 GTGAGTTTGGCAAAGTTTGGTTCGGCAATAAACACGTTGAACGACTGACTTTGGTCGATA 2512230 Query 75527 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAA 75580 || || ||||| || || ||||| | || | || |||| |||| |||||| Sbjct 2512231 AAGGCACCTCTGTCGGCAGCCATATCAATGAGTGTACGTTGACGAATCTCCCAA 2512284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934177208000