Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq21 104 2e-17 >seq21 Length=1919465 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| ||||| || | || || ||||| || || ||||| |||| | Sbjct 1352380 ATGCAAATTTTCGTCAAGACCCTCACTGGTAAAACTATCACTTTGGAAGTGGAAGGATCC 1352439 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | ||||| || ||| ||||| ||||| |||| |||||| Sbjct 1352440 GATACCATTGAAAACGTAAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAA 1352499 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | || |||| ||| || |||||||| ||||| | |||| || |||| ||||| Sbjct 1352500 CAACGTCTCATTTTTGCCGGTAAACAATTAGAAGACGGAAGAACTTTGTCCGACTATAAC 1352559 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || || ||| | || | ||||| || ||||| Sbjct 1352560 ATTCAAAAGGAATCAACTCTCCATCTCGTCCTTCGTCTCCGTGGTGG 1352606 Score = 100 bits (110), Expect = 2e-16 Identities = 181/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 111065 TAACTAATACCTTGGTCATTTATAAGAGTTTAAAA--ATGCAAATTTTTGTCAAAACGTT 111122 ||| ||||| || | || |||| ||| ||| |||||||||||||| ||||| || Sbjct 1444168 TAATTAATATTTTAATATTTAATAATAGTAACAAATCATGCAAATTTTTGTAAAAACTTT 1444227 Query 111123 GACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACA 111182 || || || ||||||||| |||| ||| || || ||| | || || Sbjct 1444228 AACTGGTAAGACCATTACCTTGGAGGTTGAAGGTTCTGACACTATTGAAAATGTCAAGAC 1444287 Query 111183 AAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAA 111242 || || ||||| ||||| |||| ||||||||| | || |||| ||| || || Sbjct 1444288 CAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAACAACGTCTCATTTTTGCCGGTAA 1444347 Query 111243 ACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111302 |||||||||||| | |||| || | ||||| || || ||||| ||||| || || || Sbjct 1444348 ACAATTGGAAGACGGCAGAACTTTGTCGGATTACAACATTCAAAAGGAATCCACTCTCCA 1444407 Query 111303 TTTAGTGTTGCGTCTGCGCGGTGG 111326 | | || | ||||| || ||||| Sbjct 1444408 TCTTGTCCTCCGTCTCCGTGGTGG 1444431 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 ||||| ||||| |||| ||||||||| | || |||| ||| || |||||||||||| Sbjct 1444982 GACAAGGAAGGTATTCCACCTGATCAACAACGTCTCATTTTTGCCGGTAAACAATTGGAA 1445041 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 || | |||| || | ||||| || || ||||| ||||| || || ||| | || | Sbjct 1445042 GACGGCAGAACTTTGTCGGATTACAACATTCAAAAGGAATCCACTCTCCATCTCGTCCTT 1445101 Query 111313 CGTCTGCGCGGTGG 111326 ||||| || ||||| Sbjct 1445102 CGTCTCCGTGGTGG 1445115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421811071479400