Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq5 165 8e-36 >seq5 Length=4166812 Score = 165 bits (182), Expect = 8e-36 Identities = 218/302 (72%), Gaps = 3/302 (1%) Strand=Plus/Minus Query 23800 CTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCT 23859 ||||| |||||||||||||||||||||| ||||| ||||| ||||| |||||||| ||| Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 23860 TCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCA 23919 |||| | |||||| ||| | || | | || | |||||||| |||||||||||| Sbjct 871420 TCAGGTATTTGAACTTCAGACATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATCA 871361 Query 23920 CTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TCAGTTGATAAT 23976 ||||| || || || | |||| || ||||| || | |||| ||| | || Sbjct 871360 GAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCATTGTCATTCAATTTA 871301 Query 23977 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCC 24036 || | ||| || || | ||| ||| ||||||| || || |||||||||| |||||| Sbjct 871300 TTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTGCC 871241 Query 24037 AAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTA 24096 || |||||||| ||||||||| ||| || ||||| |||| || |||||| Sbjct 871240 TCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATCTA 871181 Query 24097 TC 24098 || Sbjct 871180 TC 871179 Score = 105 bits (116), Expect = 7e-18 Identities = 203/297 (68%), Gaps = 7/297 (2%) Strand=Plus/Minus Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 ||| ||||| || ||||| || ||||| || | ||| ||||| || || ||||| || | Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTG--CAGCAAATGATCCGGAAAAG 23625 |||||||| | || || || || | |||||| || | ||| || | | ||||| Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAA- 871738 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 | ||||| ||||| || ||||| || || | |||| |||| | || | | Sbjct 871737 -AGATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGAC---TTGGAGTTG 871682 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 | ||||||| | | ||| | ||| || |||||||| ||| ||||||||||| Sbjct 871681 GTAATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCA 871622 Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTA 23802 || || | | ||||||| || || | | |||||||||||||||| ||||||| Sbjct 871621 TTAAATAATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487837035000