Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq57 154 2e-32 >seq57 Length=183543 Score = 154 bits (170), Expect = 2e-32 Identities = 564/878 (64%), Gaps = 19/878 (2%) Strand=Plus/Plus Query 53704 TGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 53763 ||||||||| || |||||||| || || | |||| || | ||||| || ||||| Sbjct 135146 TGCAATAGAGGCAAGATTACATACAGCAATTTCATCAGGTGATGTGTATTGAATGATCTC 135205 Query 53764 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 53823 ||| ||||||||||| | ||||||| || | ||| | |||||| || || || Sbjct 135206 AGTACAAAGATTACTGCTACTGATGGTACCGAGATTCTTTTGATTGGATTTAGCATTGCA 135265 Query 53824 CGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTT 53883 ||||||||||| | |||||||| ||||||||||||| || || || ||||| || Sbjct 135266 AGCATCCTTATACAATATGAATGGTGTACCAGTTTCAACTTGTGACTCCATAATTGCAAA 135325 Query 53884 CCAGACGACACGAGCCTTTATTATAGAT-TTGTA---TCTCTTTTCTCTTTCGTATAGTG 53939 ||| | | | ||||| |||| | | ||| | ||| | | ||| ||| | Sbjct 135326 CCAAAGTTCTTGTGCCTTAATTACACGTCTTGGAAGATCTGGTGTTGCTTC---ATATTT 135382 Query 53940 TATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT-----CCAGGACATTCATC 53994 || | | | || |||| || | ||| | || || |||| Sbjct 135383 TA---AGTAGAGGGCACGATGCTCCTCAGAGTGAGTCTCAGAGAGACCTGGTGCCTCATT 135439 Query 53995 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 54054 ||||| | | | ||| || || | | | || |||| |||||||| |||| | Sbjct 135440 TGGACAAAAGAGTGCCCAATCACCATTTTGTTCAACACGTTCCATAAAGATATCACTGAC 135499 Query 54055 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 54114 ||| ||||| || || ||||| | ||| || || || || || || || || || Sbjct 135500 CCAGAGAGCGTAGAAGAGGTCTCTTGCTCTCATCTCTTCTTTACCAGTGTTTTTCTTGAG 135559 Query 54115 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGG 54174 ||| | ||| | | | ||| | |||||| || || ||||| | || | | || Sbjct 135560 ATCAATAAACTCAAATACATCGGCATGCCATGGCTCTAAGTAGACGGCAAAGGCACCTTT 135619 Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234 | || || || || || | || | || || | ||| |||| | | |||||| Sbjct 135620 TCTCTTACCACCACCTTGGTCAACATAACGTGCAGTATCATTGAAAACACGAAGCATTGG 135679 Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 54294 | | ||| ||| | ||||||||| || ||||| ||| | ||||||||| || Sbjct 135680 TACCAAACCGTTGCTAGTACCATTGGTACCACGAATATAACTTTGAGCGGCACGAATCTT 135739 Query 54295 ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 | | | ||| || || || || |||| ||||||||||| ||| ||||||| || Sbjct 135740 GTGGACGGCAATACCAATACCACCAGCACTTTTTGAGATTAATGCACATTGTTTTAAGGT 135799 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TT 54412 ||| ||||| || ||||| || ||| |||| | || | ||||| || |||| | Sbjct 135800 ATCGTAGATACCATCTATTGAGTCCTCCTTCATTTGAACCAAGAAACAACTTGACATCTG 135859 Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 |||||| | || || ||||| || ||||| |||| ||| || || ||| |||| | | Sbjct 135860 TGGTGATG--GTGTACCTGCATTGAACAAGGTTGGAGTAGCATGGGTGAACAATTTCTGA 135917 Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 54532 || || | ||||| || | || || || || || ||| || ||||| | | Sbjct 135918 GAGAGATGTTTGTAGGTGTTAATGGCACTATCGATGTCTTCACCATGGATACCTACAGAG 135977 Query 54533 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 54570 |||||||| ||||| || || || | ||| || || || Sbjct 135978 ACACGCATCAACATATGTTGTGGACGTTCCACAATTTT 136015 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| | | ||| || || ||||| ||||||||||| || || |||| | Sbjct 134217 GTGAATTGAATTGCATCGGCAGCTGGACGAGTACGAAGATAGTACATACCAGTCTTTAAA 134276 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||| ||| |||||||| || ||||| | | | | || || || || Sbjct 134277 CCCTTCTTCCAAGAGTAGAAATGCATTGAAGTGAGTTTTGCAAAGGTTGGTTCAGCGATG 134336 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 | ||| | | |||||||||||||||||| || || | || |||||||| | ||| Sbjct 134337 AAAACATTGAAACTTTGACTTTGATCGATGAAAGCACCACGATCAGCAGCCATATCAATG 134396 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || |||| |||||||||| | ||||| || | | || | || ||||||| Sbjct 134397 AGAGTTCTTTGACGAATTTCCCATACGGTTTTGTAGAGTTCTTTCAATTCATCTGGAA 134454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714200744560