Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq160 109 5e-19 seq224 96.9 3e-15 seq2 96.9 3e-15 seq64 95.1 1e-14 seq6 91.5 1e-13 seq175 84.2 2e-11 >seq160 Length=80418 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || |||||||| ||| | |||||| | || || ||||||||||| |||| ||| | Sbjct 3301 AATATGCAAATTTTCGTTAAAACACTAACTGGTAAAACCATTACTCTCGAAGTTGAAGGC 3360 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || | | | || |||| ||||||| |||||||||||| | || |||| Sbjct 3361 TCTGATAACATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCACCAGAT 3420 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 ||||||||| | || ||||| || |||||| | |||||| ||| | | || || Sbjct 3421 CAACAAAGATTAATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTTTATCAGACTAT 3480 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| || ||||| |||||||| | || ||| ||||| |||| || Sbjct 3481 AACATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 3530 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| || || || |||||||| || ||| ||| | Sbjct 3532 ATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACATTGGAAGTTGAAGGTTCT 3591 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | || | ||| ||||||| |||||||||||| | | | ||||||| Sbjct 3592 GATAATATTGAAAATGTAAAGGCAAAAATTCAAGATAAAGAAGGTATCCACC-AGATCAA 3650 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || ||||| || || ||| | |||||| ||| | | ||||| || Sbjct 3651 CAAAGATTAATTTTTGCTGGTAAGCAATTAGAAGATGGTCGTACTTTATCAGATTATAAC 3710 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| |||||||| | || ||| ||||| |||| || Sbjct 3711 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 3757 >seq224 Length=37943 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | |||||||| || || ||||| |||||| ||| ||| | Sbjct 20174 AATGCAAATTTTTGTTAAAACATTAACTGGTAAAACTATTACCTTAGAAGTTGAAGGTTC 20115 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || | | | || |||| ||||| || ||||||||| | || |||||| Sbjct 20114 TGATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 20055 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | ||||| ||||| || |||||| | ||||| ||| | | |||||||| Sbjct 20054 ACAACGTCTTATTTTTGCCGGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACAA 19995 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| || ||||| ||||| ||| | || ||| ||||| |||| || Sbjct 19994 TATTCAAAAAGAATCAACTCTCCACTTAGTCTTAAGATTAAGAGGTGG 19947 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || |||||||||| | ||||| || || || |||||| | ||| Sbjct 19624 GACAAAGAAGGTATCCCACCAGATCAACAACGTCTTATTTTCGCCGGTAAACAATTAGAA 19565 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| | | |||||||||||||| || ||||| ||||| ||| | || ||| Sbjct 19564 GATGGTCGTACTCTTTCTGATTACAATATTCAAAAAGAATCAACTCTCCACTTAGTCTTA 19505 Query 29175 CGATTACGAGGAGG 29188 ||||| |||| || Sbjct 19504 AGATTAAGAGGTGG 19491 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| || || || |||||||| || ||| ||| || Sbjct 19945 ATGCAAATCTTTGTAAAAACCTTAACTGGTAAAACCATCACATTAGAAGTTGAAGGTTCA 19886 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | || ||||| || ||| || ||||||||| | || ||| ||| Sbjct 19885 GATAACATTGAAAATGTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAA 19826 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || ||||| || |||||| | |||||| ||| | | ||||||||| Sbjct 19825 CAAAGATTAATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAT 19766 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| ||||| ||| | || || ||||| |||| || Sbjct 19765 ATTCAAAAAGAATCAACTCTCCACTTAGTCTTGAGATTAAGAGGTGG 19719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || |||||||||| | ||||| || || || |||||| | ||| Sbjct 19396 GACAAAGAAGGTATCCCACCAGATCAACAACGTCTTATTTTCGCCGGTAAACAATTAGAA 19337 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || ||| | | |||||||||||||| || ||||| ||||| ||| | || ||| Sbjct 19336 GACGGTCGTACTCTTTCTGATTACAATATTCAAAAAGAATCAACTCTCCACTTAGTCTTA 19277 Query 29175 CGATTACGAGGAGG 29188 ||||| |||| || Sbjct 19276 AGATTAAGAGGTGG 19263 >seq2 Length=540591 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || ||||||||||||| | |||||||| || |||||| | ||| Sbjct 31745 GATAAAGAAGGTATCCCACCAGATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAA 31804 Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGT 29172 ||| || | || | | ||||||||||| || || ||||| ||||| ||| | || | Sbjct 31805 GATGGTCGTACCCTCT--CTGATTACAATATCCAAAAAGAATCAACTCTCCACTTAGTCT 31862 Query 29173 TACGATTACGAGGAGG 29188 || ||||| |||| || Sbjct 31863 TAAGATTAAGAGGTGG 31878 >seq64 Length=175976 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| | || || ||||||||||| |||| ||| | Sbjct 78454 ATGCAAATTTTCGTTAAAACTCTCACAGGTAAAACCATTACTCTCGAAGTAGAAGGTTCT 78395 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | || | || ||| ||| |||||||||||| | || ||| ||| Sbjct 78394 GACAACATTGAAAATGTCAAAGCAAAGATTCAAGATAAAGAAGGTATCCCACCAGACCAA 78335 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | ||||| ||||| ||||||||| | || ||| ||| | | ||||| ||| Sbjct 78334 CAACGTCTTATTTTTGCTGGCAAACAATTAGAGGATGGTCGTACTCTCTCAGATTATAAT 78275 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| |||||||| | || ||| ||||| |||| || Sbjct 78274 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 78228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||| ||| | || ||||||||||||| | || || || ||||||||| | || Sbjct 78133 GATAAAGAGGGTATCCCACCAGATCAACAAAGATTAATTTTCGCTGGCAAACAATTAGAG 78074 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| | | ||||| |||||||| || ||||| |||||||| | || ||| Sbjct 78073 GATGGTCGTACTCTCTCAGATTATAATATTCAAAAAGAATCAACTCTTCATTTAGTTTTA 78014 Query 29175 CGATTACGAGGAGG 29188 ||||| |||| || Sbjct 78013 AGATTAAGAGGTGG 78000 >seq6 Length=461532 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || |||||||| ||| | ||||| || || || |||||||| || |||| ||| Sbjct 390822 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 390763 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| | | | | | || || ||| || ||||||||| | || |||| Sbjct 390762 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGAT 390703 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 |||||| | ||||||||||| || |||||| | |||||| ||| | ||||||| Sbjct 390702 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTAT 390643 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || |||||||| || || ||| | || ||| ||||| |||| || Sbjct 390642 AACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 390593 >seq175 Length=69793 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || ||| |||||| | ||||| || || || |||||| |||| Sbjct 5913 GATAAAGAAGGTATTCCACCAGACCAACAACGTCTTATTTTCGCTGGTAAACAATTGGAG 5854 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | || | ||||||| ||||| || |||||||| |||||||| |||| | Sbjct 5853 GATGGCCGTACATTATCCGATTATAATATCCAAAAGGAATCAACTCTTCATTTGGTACTC 5794 Query 29175 CGATTACGAGGAGG 29188 ||||| |||| || Sbjct 5793 AGATTAAGAGGTGG 5780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428330795316035