Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq160 113 4e-20 seq64 107 2e-18 seq2 105 5e-18 seq6 104 2e-17 seq224 100 2e-16 seq175 93.3 3e-14 >seq160 Length=80418 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || |||||||| ||| | |||||| | || || ||||||||||| |||| ||| | Sbjct 3301 AATATGCAAATTTTCGTTAAAACACTAACTGGTAAAACCATTACTCTCGAAGTTGAAGGC 3360 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || | | | || | || ||||||| |||||||||||| | || |||| Sbjct 3361 TCTGATAACATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCACCAGAT 3420 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 ||||||||| | || ||||| || |||||||| |||||| ||| | | || || Sbjct 3421 CAACAAAGATTAATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTTTATCAGACTAT 3480 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| ||||| |||||||| | || ||| ||||| |||| || Sbjct 3481 AACATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 3530 Score = 100 bits (110), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| || || || |||||||| || ||| ||| | Sbjct 3532 ATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACATTGGAAGTTGAAGGTTCT 3591 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || | ||| ||||||| |||||||||||| | | | ||||||| Sbjct 3592 GATAATATTGAAAATGTAAAGGCAAAAATTCAAGATAAAGAAGGTATCCACC-AGATCAA 3650 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || ||||| || || ||||| |||||| ||| | | ||||| || Sbjct 3651 CAAAGATTAATTTTTGCTGGTAAGCAATTAGAAGATGGTCGTACTTTATCAGATTATAAC 3710 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| |||||||| | || ||| ||||| |||| || Sbjct 3711 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 3757 >seq64 Length=175976 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| ||||| || |||||||||||| |||| ||| | Sbjct 77998 ATGCAAATTTTTGTAAAAACCTTGACCGGTAAAACCATTACCCTCGAAGTAGAAGGTTCT 77939 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || |||| ||| ||| |||||||| ||| | || ||| ||| Sbjct 77938 GACAACATTGAAAATGTCAAAGCAAAGATTCAAGATAAAGAGGGTATCCCACCAGACCAA 77879 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | ||||| ||||| || |||||||| || ||| ||| | | ||||| ||| Sbjct 77878 CAACGTCTTATTTTTGCTGGTAAACAATTAGAGGATGGTCGTACTCTCTCAGATTATAAT 77819 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| |||||||| | || ||| ||||| |||| || Sbjct 77818 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 77772 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | || || ||||||||||| |||| ||| | Sbjct 78454 ATGCAAATTTTCGTTAAAACTCTCACAGGTAAAACCATTACTCTCGAAGTAGAAGGTTCT 78395 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || |||| ||| ||| |||||||||||| | || ||| ||| Sbjct 78394 GACAACATTGAAAATGTCAAAGCAAAGATTCAAGATAAAGAAGGTATCCCACCAGACCAA 78335 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | ||||| ||||| ||||||||||| || ||| ||| | | ||||| ||| Sbjct 78334 CAACGTCTTATTTTTGCTGGCAAACAATTAGAGGATGGTCGTACTCTCTCAGATTATAAT 78275 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| |||||||| | || ||| ||||| |||| || Sbjct 78274 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 78228 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||| ||| | || ||||||||||||| | || || || ||||||||||| || Sbjct 78133 GATAAAGAGGGTATCCCACCAGATCAACAAAGATTAATTTTCGCTGGCAAACAATTAGAG 78074 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | ||||| ||||||||||| ||||| |||||||| | || ||| Sbjct 78073 GATGGTCGTACTCTCTCAGATTATAATATTCAAAAAGAATCAACTCTTCATTTAGTTTTA 78014 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 78013 AGATTAAGAGGTGG 78000 >seq2 Length=540591 Score = 105 bits (116), Expect = 5e-18 Identities = 106/136 (78%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||||||||||||| | |||||||| || |||||||| ||| Sbjct 31745 GATAAAGAAGGTATCCCACCAGATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAA 31804 Query 25188 GAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGT 25245 ||| || | || | | ||||||||||| ||||| ||||| ||||| ||| | || | Sbjct 31805 GATGGTCGTACCCTCT--CTGATTACAATATCCAAAAAGAATCAACTCTCCACTTAGTCT 31862 Query 25246 TACGATTACGAGGAGG 25261 || ||||| |||| || Sbjct 31863 TAAGATTAAGAGGTGG 31878 >seq6 Length=461532 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || |||||||| ||| | ||||| || || || |||||||| || |||| ||| Sbjct 390822 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 390763 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| | | | | |||| || ||| || ||||||||| | || |||| Sbjct 390762 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGAT 390703 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||| | ||||||||||| || |||||||| |||||| ||| | ||||||| Sbjct 390702 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTAT 390643 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||||||||| || || ||| | || ||| ||||| |||| || Sbjct 390642 AACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 390593 >seq224 Length=37943 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | |||||||| || || ||||| |||||| ||| ||| | Sbjct 20174 AATGCAAATTTTTGTTAAAACATTAACTGGTAAAACTATTACCTTAGAAGTTGAAGGTTC 20115 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || | | | || | || ||||| || ||||||||| | || |||||| Sbjct 20114 TGATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 20055 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | ||||| ||||| || |||||||| ||||| ||| | | |||||||| Sbjct 20054 ACAACGTCTTATTTTTGCCGGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACAA 19995 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||| ||||| ||||| ||| | || ||| ||||| |||| || Sbjct 19994 TATTCAAAAAGAATCAACTCTCCACTTAGTCTTAAGATTAAGAGGTGG 19947 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || |||||||||| | ||||| || || || |||||||| ||| Sbjct 19624 GACAAAGAAGGTATCCCACCAGATCAACAACGTCTTATTTTCGCCGGTAAACAATTAGAA 19565 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | ||||||||||||||||| ||||| ||||| ||| | || ||| Sbjct 19564 GATGGTCGTACTCTTTCTGATTACAATATTCAAAAAGAATCAACTCTCCACTTAGTCTTA 19505 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 19504 AGATTAAGAGGTGG 19491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| || || || |||||||| || ||| ||| || Sbjct 19945 ATGCAAATCTTTGTAAAAACCTTAACTGGTAAAACCATCACATTAGAAGTTGAAGGTTCA 19886 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || | ||| || ||| || ||||||||| | || ||| ||| Sbjct 19885 GATAACATTGAAAATGTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAA 19826 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || ||||| || |||||||| |||||| ||| | | ||||||||| Sbjct 19825 CAAAGATTAATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAT 19766 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| ||||| ||| | || || ||||| |||| || Sbjct 19765 ATTCAAAAAGAATCAACTCTCCACTTAGTCTTGAGATTAAGAGGTGG 19719 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || |||||||||| | ||||| || || || |||||||| ||| Sbjct 19396 GACAAAGAAGGTATCCCACCAGATCAACAACGTCTTATTTTCGCCGGTAAACAATTAGAA 19337 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || ||| | | ||||||||||||||||| ||||| ||||| ||| | || ||| Sbjct 19336 GACGGTCGTACTCTTTCTGATTACAATATTCAAAAAGAATCAACTCTCCACTTAGTCTTA 19277 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 19276 AGATTAAGAGGTGG 19263 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || ||||||| || || || |||||||| || ||| ||| || Sbjct 19033 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAAACCATCACATTAGAAGTTGAAGGTTCA 18974 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || | || || ||| || ||||||||| | || ||| ||| Sbjct 18973 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAA 18914 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || ||||| || |||||||| |||||| ||| | | ||||| ||| Sbjct 18913 CAAAGATTAATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTATAAT 18854 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| ||||| ||| | || || ||||| |||| || Sbjct 18853 ATTCAAAAAGAATCAACTCTCCACTTAGTCTTGAGATTAAGAGGTGG 18807 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 ||||||||| || || ||||||||| | || ||| ||||||||| | || || || Sbjct 19182 AAGCAAAAA-TTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCT 19124 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 || |||||||| ||||| ||| | | ||||||||||||||||| ||||| ||| Sbjct 19123 GGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACAATATTCAAAAAGAATCAACT 19064 Query 25233 CTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||| | || || ||||| |||| || Sbjct 19063 CTCCACTTAGTCTTGAGATTAAGAGGTGG 19035 >seq175 Length=69793 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || ||| ||||||||| | || || || || |||||||||||| Sbjct 5457 GACAAAGAAGGTATTCCACCAGACCAACAAAGATTGATTTTCGCTGGTAAACAATTGGAA 5398 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | |||||||| |||||||||||||| ||||| ||| |||| | Sbjct 5397 GATGGTCGTACTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCACTTGGTACTC 5338 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 5337 AGATTAAGAGGTGG 5324 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||| |||||| | ||||| || || || ||||||||||| Sbjct 5913 GATAAAGAAGGTATTCCACCAGACCAACAACGTCTTATTTTCGCTGGTAAACAATTGGAG 5854 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | || | ||||||| ||||| ||||||||||| |||||||| |||| | Sbjct 5853 GATGGCCGTACATTATCCGATTATAATATCCAAAAGGAATCAACTCTTCATTTGGTACTC 5794 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 5793 AGATTAAGAGGTGG 5780 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || ||||| || || || ||||| || |||| || | || Sbjct 5778 ATGCAAATCTTTGTTAAGACATTAACTGGTAAGACCATCACTCTCGAAGTTGAGGGCTCA 5719 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || | || ||||||| || ||||||||| | || || ||| Sbjct 5718 GATAATATTGAAAATGTGAAAACAAAAATTCAAGACAAAGAAGGTATCCCACCTGACCAA 5659 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 |||||| | || || || || ||||||||||||||| || | | ||| ||||||||| Sbjct 5658 CAAAGATTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACATTAT--CCGATTACA 5601 Query 25213 ATATTCAAAAGGAATCTACTCTTCA 25237 | |||||||| ||||| ||||| || Sbjct 5600 ACATTCAAAAAGAATCCACTCTCCA 5576 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || || |||||| | || ||| |||||| | ||||| || || || ||| Sbjct 6150 AAAATTCAAGACAAGGAAGGTATTCCACCAGACCAACAACGTCTTATTTTCGCTGGTAAA 6091 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||| ||| | | |||||||| ||||||||||| || ||||| || Sbjct 6090 CAATTGGAAGATGGTCGTACTCTTTCTGATTACAACATTCAAAAGGAGTCCACTCTCCAT 6031 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 |||| | ||||| |||| || Sbjct 6030 TTGGTACTCAGATTAAGAGGTGG 6008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410791808433758