Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq62 98.7 1e-15 seq6 95.1 1e-14 >seq62 Length=176758 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| || |||||||| || |||| ||||||| | Sbjct 77039 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACTCTCGAAGTCGAAGGTAGT 77098 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || | ||||| | |||||||| || || || | || || Sbjct 77099 GACAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 77158 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | ||| || ||||| | || |||| || || ||| ||||||||| Sbjct 77159 CAACGTCTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCTCTCTGACTACAAC 77218 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || | || || ||| |||| Sbjct 77219 ATCCAAAAAGAATCAACCCTCCATTTAGT 77247 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| || |||||||| || |||| || |||| | Sbjct 77495 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACTCTCGAGGTTGAAGGTAGT 77554 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | ||||| | |||||||| || || || | || || Sbjct 77555 GACAATATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 77614 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | ||| || ||||| | || |||| || || ||| ||||||||| Sbjct 77615 CAACGTCTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCTCTCTGACTACAAC 77674 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || |||| || || |||| Sbjct 77675 ATCCAAAAAGAATCCACTCTCCACTTAGT 77703 >seq6 Length=461532 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| ||||| | || || ||||||||||| |||| || |||| Sbjct 390822 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 390763 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | ||||| |||| | || |||| |||||||| || ||||| | || Sbjct 390762 TCAGACAACATCGAAAACG-TCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGA 390704 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| || |||| || || ||||| | || || | || || | ||| || Sbjct 390703 TCAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTA 390644 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 |||||||| ||||| | || || || |||| || Sbjct 390643 TAACATCCAAAAGGAATCAACCCTCCACTTAGTTTT 390608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515212779080720