Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq224 102 9e-17 seq175 95.1 1e-14 >seq224 Length=37943 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | ||| || || || | || || ||||||||||||||||||| Sbjct 19035 CCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19094 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| |||| || ||||||||||| || | || || ||||| | || Sbjct 19095 AGAGTACGACCGTCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGG 19154 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||| | ||| |||||| ||||| | | | | ||||| ||| || Sbjct 19155 ATACCTTCTTTGT-CTTGAATTTTTGCTTTGACATTTTCAATGTTATCGCTACCTTCAAC 19213 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || |||| || || |||||||||||||| Sbjct 19214 TTCTAATGTGATTGTTTTACCAGTTAAGGTTTTGACAAAGATTTGCAT 19261 >seq175 Length=69793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | | |||||||| | ||| |||||||||||| |||||||||| Sbjct 6008 CCACCTCTTAATCTGAGTACCAAATGGAGAGTGGACTCCTTTTGAATGTTGTAATCAGAA 6067 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | || ||||||||||| || || || || ||||| | || Sbjct 6068 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGA 6127 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||| | ||| |||| | ||| | | | | |||| ||| || Sbjct 6128 ATACCTTCCTTGT-CTTGAATTTTGGTTTTTACATTTTCAATATTGTCAGAACCTTCTAC 6186 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | || |||||||| || || || || || ||||||||||||||| Sbjct 6187 TTCTAAAGTAATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCATT 6235 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||||||| | | |||||||| | ||| ||||||||||| ||||| |||| Sbjct 5095 TCCACCTCTTAATCTGAGTACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGA 5154 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || |||| ||||| || ||||| ||||| ||||| || || || || | || Sbjct 5155 AAGAGTACGACCGTCTTCTAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGG 5214 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | || ||| | ||| | || || || | || | | |||| || ||| | Sbjct 5215 AATAC-CTTCTTTATCTTGAATCTTGGTCTTTACATTCTCGATATTGTCACTACCTTCAA 5273 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || ||||| || || || || || || |||||||||||||| Sbjct 5274 CTTCAAGAGTAATGGTCTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 5322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571810473723160