Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq175 116 3e-21 seq62 91.5 1e-13 seq224 86.0 5e-12 >seq175 Length=69793 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | |||||| || || ||| ||||| |||||||||||||| Sbjct 5096 CCACCTCTTAATCTGAGTACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAA 5155 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| || |||||||| |||||||| || | || ||||| || || || Sbjct 5156 AGAGTACGACCGTCTTCTAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGA 5215 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || || || ||| || ||| || | | | |||| | ||| || || Sbjct 5216 ATACCTTCTTTATCTTGAATCTTGGTCTTTACATTCTCGATATTGTCACTACCTTCAACT 5275 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| ||||| || || ||||| || |||||||||||||| Sbjct 5276 TCAAGAGTAATGGTCTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 5322 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | ||||||||| || ||| ||||| ||||||||||| || Sbjct 5324 CCACCTCTTAATCTGAGTACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAA 5383 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| |||||| || ||||| ||||| | |||||||| || || Sbjct 5384 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGA 5443 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||| || || || | | | | | || | ||| || || Sbjct 5444 ATACCTTCTTTGTCTTGAATCTTGGTTTTTACATTCTCAATGTTATCGCTACCTTCAACT 5503 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || || || || || || || |||||||| Sbjct 5504 TCCAAGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 5550 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | |||||| || || ||| |||||| ||||||||||| || Sbjct 6008 CCACCTCTTAATCTGAGTACCAAATGGAGAGTGGACTCCTTTTGAATGTTGTAATCAGAA 6067 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| |||||| || ||||| || | || |||||||| || || Sbjct 6068 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGA 6127 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| |||||| || || | | |||| ||| || || Sbjct 6128 ATACCTTCCTTGTCTTGAATTTTGGTTTTTACATTTTCAATATTGTCAGAACCTTCTACT 6187 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| || || || || ||||| || |||||||||||||| Sbjct 6188 TCTAAAGTAATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 6234 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | || || || || ||| || || ||||||||||| ||| Sbjct 5552 CCACCTCTCAATCTAAGAACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAATCGGAT 5611 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | ||| | || |||| |||||| || ||||| ||||| | |||||||| || || Sbjct 5612 AATGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGG 5671 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||||||| || || | | | || ||||| || Sbjct 5672 ATACCTTCTTTGTCTTGAATTTTTGTTTTCACATTTTCAATATTATCTGAGCCCTCAACT 5731 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || || | ||||| |||||||||||||| Sbjct 5732 TCGAGAGTGATGGTCTTACCAGTTAATGTCTTAACAAAGATTTGCAT 5778 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | |||||| || || || ||||| || || || || ||| Sbjct 5780 CCACCTCTTAATCTGAGTACCAAATGAAGAGTTGATTCCTTTTGGATATTATAATCGGAT 5839 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | || | || |||| |||||| || ||||| || | || |||||||| || || Sbjct 5840 AATGTACGGCCATCCTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGA 5899 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || || || ||| || ||| || | | | | |||| | ||| || || Sbjct 5900 ATACCTTCTTTATCTTGAATCTTGGTCTTTACATTCTCGATGTTGTCACTACCTTCAACT 5959 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| ||||| || || ||||| || |||||||||||||| Sbjct 5960 TCAAGAGTAATGGTCTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 6006 >seq62 Length=176758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||| ||||| | || ||||| || ||| || || || ||||||||||| Sbjct 77722 GCCACCTCTTAATCTAAGGACTAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGA 77663 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| || | |||||| |||||||| || | || ||||| || || || Sbjct 77662 GAGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGG 77603 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||| || ||||| ||||| || || | | | |||| | ||| || || Sbjct 77602 AATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATATTGTCACTACCTTCAAC 77543 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||||| || || || || || || || ||||| |||||||| Sbjct 77542 CTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 77495 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | || || || || || || || || ||||||||||| Sbjct 77265 CCACCTCTTAATCTAAGAACTAAATGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGAG 77206 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| || | |||||| |||||||| || | || ||||| || || || Sbjct 77205 AGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 77146 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||||| ||||| | | | | |||| | ||| || || Sbjct 77145 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTCTCAATGTTGTCACTACCTTCGACT 77086 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| || || || || || || || ||||| |||||||| Sbjct 77085 TCGAGAGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 77039 >seq224 Length=37943 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| |||||||| || ||||| || || || || ||||| ||||| || Sbjct 19263 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19322 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| || | |||||| |||||||| || | || ||||| || || || Sbjct 19323 AGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGG 19382 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||||| |||||| | | | | || | ||| || || Sbjct 19383 ATACCTTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATGTTATCACTACCTTCAACT 19442 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || || || || || | || || |||||||||||||| Sbjct 19443 TCTAAAGTGATGGTTTTACCAGTTAAGGTTTTTACAAAGATTTGCAT 19489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395070399465937