Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq160 100 2e-16 seq64 100 2e-16 seq175 96.9 3e-15 seq62 84.2 2e-11 >seq160 Length=80418 Score = 100 bits (110), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| |||||||||||||||||||| ||||| | | || || |||||| |||||| Sbjct 3506 TGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGATAAAGTACGACCATCTTCTAATTGT 3447 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | || | |||||||||||| || | ||||| ||||| ||||| | Sbjct 3446 TTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATTT-T 3388 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || || | | ||| | ||| | || ||| | || ||| |||| || || Sbjct 3387 TGCTTTAACATTTTCAATGTTATCAGAGCCTTCAACTTCGAGAGTAATGGTTTTACCAGT 3328 Query 18302 CAATGTTTTTACAAAAATTTGCATTTT 18328 | |||||| || ||||||||||| || Sbjct 3327 TAGTGTTTTAACGAAAATTTGCATATT 3301 Score = 98.7 bits (108), Expect = 8e-16 Identities = 170/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 18083 ATTTTCTTTTTGTTAT--CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTT 18140 ||||| ||||| | || || || | || ||| | || | ||||| |||||||||||| Sbjct 3775 ATTTTATTTTTTTAATTTCCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTT 3716 Query 18141 TGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGT 18200 |||||||| || || | | || || |||||| ||||| || || ||| | || | | Sbjct 3715 TGAATGTTATAATCTGATAAAGTACGACCATCTTCTAATTGCTTACCAGCAAAAATTAAT 3656 Query 18201 CTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACA 18260 |||||||||| | | | | ||||| ||||| ||||| | ||| || | | ||| | Sbjct 3655 CTTTGTTGAT-CTGGTGGATACCTTCTTTATCTTGAATTTTTGCCTTTACATTTTCAATA 3597 Query 18261 GTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATT 18320 | ||| || ||| | |||||| |||| || || || ||||| || |||||| Sbjct 3596 TTATCAGAACCTTCAACTTCCAATGTGATGGTTTTACCAGTTAAGGTTTTAACGAAAATT 3537 Query 18321 TGCAT 18325 ||||| Sbjct 3536 TGCAT 3532 >seq64 Length=175976 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| ||||||||||||||||| || || || | | || || ||| || |||||| Sbjct 77796 TGAAGAGTTGATTCTTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCTAATTGT 77855 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | ||||| | |||||| || || | || || ||||| ||| | | Sbjct 77856 TTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGGATACCCTCTTTATCTTGAATCT-T 77914 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| ||||| | | ||| ||||| || ||| | ||| ||| |||| ||||| Sbjct 77915 TGCTTTGACATTTTCAATGTTGTCAGAACCTTCTACTTCGAGGGTAATGGTTTTACCGGT 77974 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||| |||||||||||||||||||| Sbjct 77975 CAAGGTTTTTACAAAAATTTGCAT 77998 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| ||||||||||||||||| || || || | | || || ||| || |||||| Sbjct 78252 TGAAGAGTTGATTCTTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCTAATTGT 78311 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| | ||||| | |||||| || || | ||||| ||||| ||| | | Sbjct 78312 TTGCCAGCAAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCTTTATCTTGAATCT-T 78370 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| ||||| | | ||| ||||| || ||| | || ||| |||| || || Sbjct 78371 TGCTTTGACATTTTCAATGTTGTCAGAACCTTCTACTTCGAGAGTAATGGTTTTACCTGT 78430 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | ||||| || ||||||||||| Sbjct 78431 GAGAGTTTTAACGAAAATTTGCAT 78454 >seq175 Length=69793 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 |||||| || | || || || |||||||||||||||||||| |||| | ||| || Sbjct 5563 TCTAAGAACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACC 5622 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 ||||||||||||||| || || | || | ||||||||| || || | ||||| || Sbjct 5623 ATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGGATACCTTCTTT 5682 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 || ||||| | || || | | ||| | | || | ||| ||| | ||||| Sbjct 5683 GTCTTGAATTTTTGTTTTCACATTTTCAATATTATCTGAGCCCTCAACTTCGAGAGTGAT 5742 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | | || || || ||||| || ||||| |||||||| Sbjct 5743 GGTCTTACCAGTTAATGTCTTAACAAAGATTTGCAT 5778 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||| ||||||| || || || || || |||||||||||||| || | Sbjct 6008 CCACCTCTTAATCTGAGTACCAAATGGAGAGTGGACTCCTTTTGAATGTTGTAATCAGAA 6067 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || || | ||||| | |||||| || || Sbjct 6068 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGA 6127 Query 18219 ACGCCTTCCTTATCGGCAATTT--GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||| || ||||| ||| || || | | ||| | ||||| || Sbjct 6128 ATACCTTCCTTGTCTTGAATTTTGGTT--TTTACATTTTCAATATTGTCAGAACCTTCTA 6185 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || ||| |||| || || | ||||| ||||| ||||||||| Sbjct 6186 CTTCTAAAGTAATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCATT 6235 >seq62 Length=176758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || |||||| || | || || |||||||||||||| ||||||||||| | Sbjct 77265 CCACCTCTTAATCTAAGAACTAAATGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGAG 77206 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||| |||||||| || || | ||||| | ||||||||| || Sbjct 77205 AGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 77146 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || |||| | || || || | ||| |||||| ||| Sbjct 77145 ATACCTTCTTTGTCTTGGATTT-TGGCTTTAACATTCTCAATGTTGTCACTACCTTCGAC 77087 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| |||| || || | ||||| |||||||||||||| Sbjct 77086 TTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 77039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || |||||| || | ||| || || ||||||||||| ||||||||||| | Sbjct 77721 CCACCTCTTAATCTAAGGACTAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAG 77662 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||| |||||||| || || | ||||| | ||||||||| || Sbjct 77661 AGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 77602 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || |||| | || ||||| | ||| | |||||| || Sbjct 77601 ATACCTTCTTTGTCTTGGATTT-TGGCTTTGACATTCTCAATATTGTCACTACCTTCAAC 77543 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || ||| |||| || || | ||||| |||||||||||||| Sbjct 77542 CTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 77495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379339390614765