Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq57 196 6e-45 >seq57 Length=183543 Score = 196 bits (216), Expect = 6e-45 Identities = 1149/1817 (63%), Gaps = 72/1817 (4%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||| | | ||| || || ||||| ||||||||||| || || |||| | Sbjct 134217 GTGAATTGAATTGCATCGGCAGCTGGACGAGTACGAAGATAGTACATACCAGTCTTTAAA 134276 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || |||| ||| |||||||| || ||||| | | | | || || || || Sbjct 134277 CCCTTCTTCCAAGAGTAGAAATGCATTGAAGTGAGTTTTGCAAAGGTTGGTTCAGCGATG 134336 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 | ||| | | |||||||||||||||||| || || | || |||||||| | ||| Sbjct 134337 AAAACATTGAAACTTTGACTTTGATCGATGAAAGCACCACGATCAGCAGCCATATCAATG 134396 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 | || |||| ||||||||| | ||||| || | | || | || ||||||| Sbjct 134397 AGAGTTCTTTGACGAATTTCCCATACGGTTTTGTAGAGTTCTTTCAATTCATCTGGAATA 134456 Query 62286 TTTGTATTC---TGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 | || || || || |||| | | || || |||||| ||||| || Sbjct 134457 CCACCAATCGATTGGATTGAACCACGTGCAGCGATGATTTGATTCTTCATCTCTGGTGTC 134516 Query 62343 CATAATTTTCT-CTCGGTTAAAAC-TCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400 || ||| | ||| | | | | || || | || ||| || | | |||||| | Sbjct 134517 CA-AATGCCCAACTCCATGAGATCCTCCAACAAT-TGTTTGTTGACAATTGTGAATTCAC 134574 Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460 ||| ||| || | ||| ||||||| || || || ||||| | | |||||||| | Sbjct 134575 CAGCCAAGACACGACGACTGTAAATGTTTGAAGTGTATGGTTCAAAGCATTCATTATTAC 134634 Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520 | | |||||| |||||| || || ||||| ||||| | ||||| ||| | |||| Sbjct 134635 CAAGGATTTGACTAGTTGAAGCGGTTGGCATTGGTGCGATCAATAGTGAATTACGTAGAC 134694 Query 62521 CGTATGTTCTGA---TTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAA 62577 | | | ||| | ||||| |||| | |||||||||||| | ||| || Sbjct 134695 CACCTTTATTGACGATCTTATCCTTTAATTCGTCCCAATTCCAACGTGAACTTGGTGTAA 134754 Query 62578 CANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCAT 62637 || | |||| |||||||| || || || ||| | | |||| Sbjct 134755 CATTCCACATATCAAATTGGAGAATACCTTTGGATGCTGGGGAACCTTGGAAACTCTCAT 134814 Query 62638 ATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTT 62697 ||| || || | |||| || | | || ||| || || |||||||||||| Sbjct 134815 ATGTGCCATCACGTACTGCTAATTCATGAGAAGCTGTTAAAGCGGCGAAATAAATGGTTT 134874 Query 62698 CAAAGATCTTCTTATTTAGATCTTG-TGCTTCCGGGCTATCAAATGG-ATA---ATTTAA 62752 || ||| | ||| | || | | ||| | ||||| ||||| ||| |||| Sbjct 134875 CAGCGATTTCAACATTCA-ATTTAGATGCAGCAACACTATCGAATGGCATACGCATTT-- 134931 Query 62753 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812 |||| || | || || || ||||||| |||||||||||| || | |||||| ||| Sbjct 134932 --GAATGAAAACATCGGCCAAACCTTGAATACCAATACCGATTGGACGATGTCTGAGATT 134989 Query 62813 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC- 62871 || ||| || ||| || ||||||| | ||| ||| ||||| ||||||||| Sbjct 134990 CGAAGTTTTTGCCTCTACAACAGGATAAAAGTTACGATCGATAATAACGTTGAGATTTAC 135049 Query 62872 --TGA-CAA-----TTA-CT----------TTGA----CCACATCCTTCAGTTTGAGAAA 62908 ||| ||| ||| || |||| | | |||||| ||| || Sbjct 135050 AGTGATCAACTTGGTTATCTCAAAGAGGAATTGATGATCGAATTCCTTCTCTTTTGGATC 135109 Query 62909 ATCAAATCGCCCATCTATTACAAAC--ATGTTCAA--TGCAACAGATGCCAGATTACACA 62964 | | | | | | || || || || | ||||| ||| || |||||||| | Sbjct 135110 TGTGGAGC-CTGGTTTTTGACGAATGAATTTTGGAAGTGCAATAGAGGCAAGATTACATA 135168 Query 62965 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 63024 | || | |||| || | ||||| || |||||||| ||||||||||| | ||| Sbjct 135169 CAGCAATTTCATCAGGTGATGTGTATTGAATGATCTCAGTACAAAGATTACTGCTACTGA 135228 Query 63025 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63084 | || || | ||| | |||||| || || || ||||||||||| | ||||||| Sbjct 135229 TGGTACCGAGATTCTTTTGATTGGATTTAGCATTGCAAGCATCCTTATACAATATGAATG 135288 Query 63085 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63144 | ||||||||||||| || || || ||||| || ||| | || | ||||| |||| Sbjct 135289 GTGTACCAGTTTCAACTTGTGACTCCATAATTGCAAACCAAAGTTCTTGTGCCTTAATTA 135348 Query 63145 TAGAT-TTGTA---TCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCT 63200 | | ||| | ||| | | ||| | ||| | || | | | | || || Sbjct 135349 CACGTCTTGGAAGATCTGGTGTTGCTT-CATAT----TTTA-AGTAGAGGGCACGATGCT 135402 Query 63201 CCCCAAACATTGTCCAATCTAGGACAT------TCATCCGGACACATCAACGACCACTCT 63254 || || | ||| | || || | |||| ||||| | | | ||| || Sbjct 135403 CCTCAGAGTGAGTCTCAGAGAG-ACCTGGTGCCTCATTTGGACAAAAGAGTGCCCAATCA 135461 Query 63255 CCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCT 63314 || | | | || |||| |||||||| |||| | ||| ||||| || || ||| Sbjct 135462 CCATTTTGTTCAACACGTTCCATAAAGATATCACTGACCCAGAGAGCGTAGAAGAGGTCT 135521 Query 63315 CTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 63374 |||| ||| || || || || || || || || ||||| | ||| | | | ||| Sbjct 135522 CTTGCTCTCATCTCTTCTTTACCAGTGTTTTTCTTGAGATCAATAAACTCAAATACATCG 135581 Query 63375 GAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCT 63434 | |||||| || || ||||| | ||| | | || | || || || || || Sbjct 135582 GCATGCCATGGCTCTAAGTAGACGGCAAAGGCACCTTTTCTCTTACCACCACCTTGGTCA 135641 Query 63435 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA-TACC 63493 | || | || || | ||| |||| | | |||||| | | |||||| | || |||| Sbjct 135642 ACATAACGTGCAGTATCATTGAAAACACGAAGCATTGGTACCAAACCGTT-GCTAGTACC 135700 Query 63494 ATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCC 63553 ||||||||| ||||| | | | ||||||||| || | | | ||| || || Sbjct 135701 ATTGGTACCACGAATATAACTTTGAGCGGCACGAATCTTGTGGACGGCAATACCAATACC 135760 Query 63554 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCT 63613 || || |||| ||||||||||| ||| ||||||| || || ||||| || ||||| Sbjct 135761 ACCAGCACTTTTTGAGATTAATGCACATTGTTTTAAGGTATCGTAGATACCATCTATTGA 135820 Query 63614 ATCATCGATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGAGTAGTTCCCGCA 63671 || || |||| | || | ||||| || |||| | |||||| | || || || ||| Sbjct 135821 GTCCTCCTTCATTTGAACCAAGAAACAACTTGACATCTGTGGTGATG-GT-GTACCTGCA 135878 Query 63672 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63731 || || ||||| |||| ||| || || ||| |||| | ||| || | ||||| || | | Sbjct 135879 TTGAACAAGGTTGGAGTAGCATGGGTGAACAATTTCTGAGAGAGATGTTTGTAGGTGTTA 135938 Query 63732 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63791 || || || || || ||| || ||||| | ||||||||| ||||| || || Sbjct 135939 ATGGCACTATCGATGTCTTCACCATGGATACCTACAGAGACACGCATCAACATATGTTGT 135998 Query 63792 GGTCTTTCAACAATTTT 63808 || | ||| |||||||| Sbjct 135999 GGACGTTCCACAATTTT 136015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629809750898160