Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq57 156 4e-33 >seq57 Length=183543 Score = 156 bits (172), Expect = 4e-33 Identities = 1123/1779 (63%), Gaps = 70/1779 (4%) Strand=Plus/Plus Query 36834 ATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTT 36893 ||| ||||| ||||| |||| ||| |||| ||| |||||||| || ||||| Sbjct 134255 ATAGTACATACCAGTCTTTAAACCCTTCTTCCAAGAGTAGAAATGCATTGAAGTGAGTTT 134314 Query 36894 TGCGTATGTAGGATTATCTAT--ATATATTGTCATTGATTGACTTTGATCTATAAACGCA 36951 ||| | || || | | | || | | |||| | | |||||||||||| || || ||| Sbjct 134315 TGCAAAGGTTGGTTCAGCGATGAAAACATTGAAACT--TTGACTTTGATCGATGAAAGCA 134372 Query 36952 CCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATAT 37011 || | || || ||||| || | | | | ||||| || ||||| || ||||| || Sbjct 134373 CCACGATCAGCAGCCATATCAATGAGAGTTCTTTGACGAATTTCCCATACGGTTTTGTAG 134432 Query 37012 ATTTGTTTTATATTATCTGGTAAATCTA-AATG--TTGAATAGAACCATTATGTAAC-AC 37067 | || ||| | | |||||| | | | ||| ||| || |||||| || | | | Sbjct 134433 AGTTCTTTCAATTCATCTGGAATACCACCAATCGATTGGATTGAACCACG-TGCAGCGAT 134491 Query 37068 AATTGTATTCTTTATGTCATTATTCCACATATTTCTACTT-ATTAGTTCTCTCAATAGGT 37126 ||| |||||| || || |||| || | ||| || || || ||| | | Sbjct 134492 GATTTGATTCTTCATCTCTGGTGTCCAAATGCC-CAACTCCATGAGATCCTCCAACAATT 134550 Query 37127 GTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTAT 37186 || || |||| || || |||| || || | | | || || || ||| | Sbjct 134551 GTTTGTTGACAATTGTGAATTCACCAGCCAAGACACGACGACTGTAAATGTTTGAAGTGT 134610 Query 37187 ATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTG 37246 ||||||||| | | |||||||||| | |||||| || || || || |||||||||| Sbjct 134611 ATGGTTCAAAGCATTCATTATTACCAAGGATTTGACTAGTTGAAGCGGTTGGCATTGGTG 134670 Query 37247 CTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTT---TTAGTTCATTCC 37303 | || | || ||| | | ||| | |||| | |||| | ||| ||| | || Sbjct 134671 CGATCAATAGTGAATTACGTAGACCACCTTTATTGACGATCTTATCCTTTAATTCGTCCC 134730 Query 37304 AATCCCA---TAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTAC 37360 ||| ||| | || || || || |||||||||| |||| ||||||||||| Sbjct 134731 AATTCCAACGTGAACTTGGTGTAACATT---CCACATATCAAATTGGAGAATACCTTTGG 134787 Query 37361 TCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAG 37420 ||||| ||| | | | ||||||| | || | | | |||| ||| | || Sbjct 134788 ATGCTGGGGAACCTTGGAAACTCTCATATGTGCCATCACGTACTGCTAATTCATGAGAAG 134847 Query 37421 ATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTT 37480 | || ||||| |||| || ||||| |||| | ||| ||| | ||| | Sbjct 134848 CTGTTAAAGCGGCGAAATAAATGGTTTCAGCGATTTCAACATTCAATTTAGATGCAGCAA 134907 Query 37481 CGCTATCGAATG-CATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATA 37539 | |||||||||| |||| | || | || || ||||| |||||||| |||| ||| ||| Sbjct 134908 CACTATCGAATGGCATA-CGCATTTGAATGAAAACATCGGCCAAACCTTGAATACCAATA 134966 Query 37540 CCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATA 37599 || || || | |||| | ||| || | | |||| || |||||| | || | Sbjct 134967 CCGATTGGACGATGTCTGAGATTCGAAGTTTTTGCCTCTACAACAGGATAAAAGTTACGA 135026 Query 37600 TCTATTATTTTATTTAGATTT-------TTAACTAGTATTT-TC-----GTAATT----- 37641 || || || || |||||| | |||| | | | || | |||| Sbjct 135027 TCGATAATAACGTTGAGATTTACAGTGATCAACTTGGTTATCTCAAAGAGGAATTGATGA 135086 Query 37642 ----ATTC-TCAACTTGTCGAACA-TAAATAC--GTTATT-ATTAACAAATTTACTCAAC 37692 |||| | ||| | || | | | | ||| || | || ||||| | Sbjct 135087 TCGAATTCCTTCTCTTTTGGATCTGTGGAGCCTGGTTTTTGACGAATGAATTTTGGAAGT 135146 Query 37693 GAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTAC-TAAATTGTATAATCTC 37751 | |||||| | |||||||||||||||| |||||| || | | |||| || ||||| Sbjct 135147 GCAATAGAGGCAAGATTACATACAGCAATTTCATCAG-GTGATGTGTATTGAATGATCTC 135205 Query 37752 TGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACA 37811 ||||| |||||||| || || || || | ||| ||||||||||||| ||| || Sbjct 135206 AGTACAAAGATTACTGCTACTGATGGTACCGAGATTCTTTTGATTGGATTTAGCATTGCA 135265 Query 37812 AGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTT 37871 || ||| ||||| | ||| | || || || ||| | ||| | ||| ||||| | Sbjct 135266 AGCATCCTTATACAATATGAATGGTGTACCAGTTTCAACTTGTGACTCCATAATTGCAAA 135325 Query 37872 CCATAAACTTCTTG--CTTTAACGAT-CGCTTT--AAtttttttCTTTGTTTCGTATTCT 37926 ||| || |||||| | |||| | || || || | | ||| ||| |||| | Sbjct 135326 CCA--AAGTTCTTGTGCCTTAATTACACGTCTTGGAAGATCTGGTGTTGCTTCATATTTT 135383 Query 37927 ATATATAATTTGTTAAAATCATTCCCCCATACA---TCGCATAATCCTGGACATTCGCAT 37983 | || | | | || | | | | | || | | ||||| || | Sbjct 135384 AAGTAGAG---GGCACGATGCTCCTCAGAGTGAGTCTCAGAGAGACCTGGTGCCTCATTT 135440 Query 37984 GGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACC 38043 ||||| | || | ||| || ||| || ||| || ||||||||||| | |||| ||| Sbjct 135441 GGACAAAAGAGTGCCCAATCACCATTTTGTTCAACACGTTCCATAAAGATATCACTGACC 135500 Query 38044 CATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAA 38102 || | || ||| || | ||| | | ||| ||||| || || || |||||| | Sbjct 135501 CAGAGAGC-GTAGAAGAGGTCTCTTGCTCTCATCTCTTCTTTACCAGTGTT-TTTCTTGA 135558 Query 38103 GCTTAGAAAA-TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTG 38161 | | | ||| || |||| ||| || |||||||| |||| || | | | || ||| Sbjct 135559 GATCAATAAACTCAAATACATCGGCATGCCATGGCTCTAAGTAGACGGCAAAGGCACCTT 135618 Query 38162 GTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAG 38221 ||| ||| |||| || || | || ||| | | || | ||| | | | | ||| | Sbjct 135619 TTCTCTTACCACCACCTTGGTCAACATAACGTGCAGTATCATTGAAAACACGAAGCATTG 135678 Query 38222 GTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATAT 38281 |||| | ||| || | || || |||| |||||| | || || || | Sbjct 135679 GTACCAAACCGTTGCTAGTACCATTGGTACCACGAATATAACTTTGAGCGGCACGAATCT 135738 Query 38282 TACTTATCGACAAT-CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAAC 38340 | | || |||| || || ||||| ||| |||||| ||||| || ||||||||||| Sbjct 135739 TGTGGA-CGGCAATACCAATACCACCAGCACTTTTTGAGATTAATGCACATTGTTTTAAG 135797 Query 38341 GTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATT 38400 ||||| | ||||| ||||| ||| ||||| ||| | | | |||||||| ||||| Sbjct 135798 GTATCGTAGATACCATCTATTGAGTCCTCCTTCATTTGAACCAAGAAACAACTTGACATC 135857 Query 38401 TGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCC 38460 || || |||| || || || || || || || |||| ||||| ||||| |||| | Sbjct 135858 TGTGGTGATGGTGTACCTGCATTGAACAAGGTTGGAGTAGCATGGGTGAACAATTTCTGA 135917 Query 38461 GACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGAT 38520 || | || || || || | || || ||| || || | || || ||||||| ||| Sbjct 135918 GAGAGATGTTTGTAGGTGTTAATGGCACTATCGATGTCTTCACCATGGATACCTACAGAG 135977 Query 38521 ACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA 38559 || | ||| | |||||||||||| | ||| | |||||| Sbjct 135978 ACACGCATCAACATATGTTGTGGACGTTCCACAATTTTA 136016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468518961009680