Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq64 102 8e-17 seq224 100 3e-16 seq160 96.9 3e-15 seq6 93.3 4e-14 seq57 89.7 5e-13 seq175 87.8 2e-12 >seq64 Length=175976 Score = 102 bits (112), Expect = 8e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||| |||| || || ||||||||||| ||||||| || Sbjct 77772 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAAT--CTG 77829 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | | ||| || || | |||||||||||| | || |||||||| || || || | Sbjct 77830 AGAGAGTACGACCATCCTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTG 77889 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCC 139714 | || || ||||| || ||| | |||| ||| | || || || |||| | || Sbjct 77890 GGATACCCTCTTTATC-TTGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCT 77948 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | ||| | || || |||||||| |||||||| || ||||||||| Sbjct 77949 ACTTCGAGGGTAATGGTTTTACCGGTCAAGGTTTTTACAAAAATTTGCATA 77999 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||| |||| || || ||||||||||| ||||||| || Sbjct 78228 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAAT--CTG 78285 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | | ||| || || | ||||| |||||| | || |||||||| || || || | Sbjct 78286 AGAGAGTACGACCATCCTCTAATTGTTTGCCAGCAAAAATAAGACGTTGTTGGTCTGGTG 78345 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCC 139714 | || |||||||| || ||| | |||| ||| | || || || |||| | || Sbjct 78346 GGATACCTTCTTTATC-TTGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCT 78404 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || | || || || || | ||||| ||||| ||||||||| Sbjct 78405 ACTTCGAGAGTAATGGTTTTACCTGTGAGAGTTTTAACGAAAATTTGCATA 78455 >seq224 Length=37943 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | || |||||||| | || || ||||||||||| || ||||| Sbjct 19491 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19550 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||| || | || |||||||| ||||| || || Sbjct 19551 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGG 19610 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || ||||||||||| || |||| | |||| | || || || | || | || || Sbjct 19611 ATACCTTCTTTGTC-TTGGATTTTGGCTTTAACATTTTCAATGTTATCACTACCTTCAAC 19669 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | ||||| |||||||| ||||| || || ||||||||| Sbjct 19670 CTCAAGAGTAATGGTCTTACCGGTCAAAGTTTTAACAAAAATTTGCATA 19718 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | || |||||||| | || || ||||||||||| || ||||| Sbjct 19947 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 20006 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | |||||||| ||| | || |||||||| ||||| || || Sbjct 20007 AGAGTACGACCGTCTTCTAATTGTTTACCGGCAAAAATAAGACGTTGTTGATCTGGTGGA 20066 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || ||||||||||| || |||| | |||| | || || || | || | || || Sbjct 20067 ATACCTTCTTTGTC-TTGGATTTTGGCTTTAACATTTTCAATGTTATCAGAACCTTCAAC 20125 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGtttt 139776 || | ||| | || || || || || ||||| || || |||||||| ||| || |||| Sbjct 20126 TTCTAAGGTAATAGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATTGCTAATTTTTT 20185 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||| |||||||| | || || ||||||||||| || ||||| Sbjct 19035 CCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19094 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | ||||||||||| | || | | ||| || || || || Sbjct 19095 AGAGTACGACCGTCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGG 19154 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||||| ||| | || || || | ||| | || || Sbjct 19155 ATACCTTCTTTGTC-TTGAATTTTTGCTTTGACATTTTCAATGTTATCGCTACCTTCAAC 19213 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || || || ||||| || || ||||||||| Sbjct 19214 TTCTAATGTGATTGTTTTACCAGTTAAGGTTTTGACAAAGATTTGCATA 19262 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | || |||||||| | || || ||||||||||| || ||||| Sbjct 19263 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19322 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | |||||||| || | || |||||||| ||||| || || Sbjct 19323 AGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGG 19382 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || ||||||||||| || |||| | ||| | || || || | || | || || Sbjct 19383 ATACCTTCTTTGTC-TTGGATTTTGGCCTTAACATTTTCAATGTTATCACTACCTTCAAC 19441 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || || || |||||||| || ||||||||| Sbjct 19442 TTCTAAAGTGATGGTTTTACCAGTTAAGGTTTTTACAAAGATTTGCATA 19490 >seq160 Length=80418 Score = 96.9 bits (106), Expect = 3e-15 Identities = 170/242 (70%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||| |||| || || ||||||||||||||||| | || Sbjct 3530 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATGTTATAGT--CTG 3473 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || | ||| ||||| | |||||||||||| | || | | ||| ||||| || | Sbjct 3472 ATAAAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGATCTGGTG 3413 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCC 139714 | || |||||||| || ||| |||||| |||| | || || || | || | | || Sbjct 3412 GAATACCTTCTTTATC-TTGAATTTTTGCTTTAACATTTTCAATGTTATCAGAGCCTTCA 3354 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGtt 139774 || || | || | || || || || | ||||| ||||| ||||||||| || |||| Sbjct 3353 ACTTCGAGAGTAATGGTTTTACCAGTTAGTGTTTTAACGAAAATTTGCATA--TTGTGTT 3296 Query 139775 tt 139776 || Sbjct 3295 TT 3294 >seq6 Length=461532 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||| | || || || ||||| |||||||||||| Sbjct 390593 CCACCTCTTAATCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGAT 390652 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||| ||| |||| |||||||| ||||| || || Sbjct 390653 AAAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 390712 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | ||| | | ||| | |||| | || || Sbjct 390713 ATACCTTCTTTGTC-TTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAAC 390771 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || || ||||| ||||| |||||||| Sbjct 390772 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCAT 390819 >seq57 Length=183543 Score = 89.7 bits (98), Expect = 5e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 153454 CATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttttG 153513 ||||||||||||||||||| ||||| || || |||||||| | | ||| || |||||| Sbjct 134941 CATCGGCCAAACCTTGAATACCAATACCGATTGGACGATGTCTGAGATTCGAAGTTTTTG 135000 Query 153514 CAGCTTCAACAGGATAGAAATTGCGGTCGATAAT 153547 | || |||||||||| || || || |||||||| Sbjct 135001 CCTCTACAACAGGATAAAAGTTACGATCGATAAT 135034 >seq175 Length=69793 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 |||||| || | || || |||||||||||||| |||||| | ||| | ||||| Sbjct 5569 AACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATCTTC 5628 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||||||||||| | |||| | ||| || || || || || ||||||||||| | Sbjct 5629 CAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGGATACCTTCTTTGTC-TT 5687 Query 139675 GATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||||||||| | | ||| | | || | | ||| || || | || | |||| Sbjct 5688 GAATTTTTGTTTTCACATTTTCAATATTATCTGAGCCCTCAACTTCGAGAGTGATGGTCT 5747 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || || || || || || ||||||||| Sbjct 5748 TACCAGTTAATGTCTTAACAAAGATTTGCATA 5779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496057817802400