Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq224 114 1e-20 seq62 107 1e-18 seq64 96.9 3e-15 seq175 93.3 3e-14 seq73 84.2 2e-11 >seq224 Length=37943 Score = 114 bits (126), Expect = 1e-20 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || || |||| ||| || ||||| | ||||||||| || | ||||| | Sbjct 19958 TCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGACC 20017 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 ||| || |||||||| ||||||||||| | || |||||||| | || | ||||||||| Sbjct 20018 GTCTTCTAATTGTTTACCGGCAAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTT 20077 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| |||| || | ||| | || | | || || |||| || || Sbjct 20078 GTCTTGGATTTTGGCTTTAACATTTTCAATGTTATCAGAACCTTCAACTTCTAAGGTAAT 20137 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTTATTT 43125 |||||| || |||| ||||| ||||||||||||| || ||||||| ||| Sbjct 20138 AGTTTTACCAGTTAATGTTTTAACAAAAATTTGCA--TTGCTAATTTTTTTT 20187 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || || |||| ||| || ||||| | ||||||||| || | ||||| | Sbjct 19502 TCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGACC 19561 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| ||||| ||||| | || |||||||| | || | ||||||||| Sbjct 19562 ATCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCTTT 19621 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| |||| || | ||| | || | | | || || || | || || Sbjct 19622 GTCTTGGATTTTGGCTTTAACATTTTCAATGTTATCACTACCTTCAACCTCAAGAGTAAT 19681 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||| | |||||| |||||||||||||| Sbjct 19682 GGTCTTACCGGTCAAAGTTTTAACAAAAATTTGCAT 19717 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 ||| || || || |||| ||| || ||||| | ||| ||||| || | ||||| | Sbjct 18818 TCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTACGACC 18877 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| || |||||||| |||| ||||| || | || | ||||||||| Sbjct 18878 ATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCTTT 18937 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| |||| || | ||| | || | | || || |||| || || Sbjct 18938 GTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCAACTTCTAATGTGAT 18997 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || |||| ||||| |||||||||||||| Sbjct 18998 GGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 19033 >seq62 Length=176758 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||| | || ||||||| ||| ||| ||||| | |||||||| || Sbjct 77037 CCACCACGAAGTCTAAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTGTAATCAGAG 76978 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| || |||||||| ||||| ||||| | || |||||||| | || Sbjct 76977 AGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 76918 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| ||||||| | | | | ||| | | || || Sbjct 76917 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCGATGTTATCGGAACCTTCAACT 76858 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || || || || ||||| |||||||||||||| Sbjct 76857 TCTAATGTGATGGTCTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 76811 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||| | || ||||||| ||| ||| ||||| | || ||||| || Sbjct 77493 CCACCACGAAGTCTAAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAATCAGAG 77434 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| || |||||||| |||||||| || |||| |||||||| | || Sbjct 77433 AGAGTACGACCGTCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGATCTGGTGGA 77374 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| ||||||| | | | | ||| | | || || Sbjct 77373 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCGATGTTATCGGAACCTTCAACT 77314 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || || || || ||||| |||||||||||||| Sbjct 77313 TCTAATGTGATGGTCTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 77267 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || || |||| |||| || ||||| | ||||| || || | ||||| |||| || Sbjct 77703 ACTAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCGTCTTCT 77644 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| ||||| ||||| | || |||||||| | || | ||||||||| || | Sbjct 77643 AATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 77584 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || ||||||| | ||| |||| | | | || || || | || || ||||| Sbjct 77583 ATTTTGGCTTTGACATTCTCAATATTGTCACTACCTTCAACCTCGAGAGTAATGGTTTTA 77524 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || ||||| |||||||||||||| Sbjct 77523 CCAGTGAGGGTTTTAACAAAAATTTGCAT 77495 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||||| || || ||||| | ||||| || || | ||||| |||| || Sbjct 77247 ACTAAATGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCGTCTTCT 77188 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| ||||| ||||| | || |||||||| | || | ||||||||| || | Sbjct 77187 AATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 77128 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| |||| | | | ||||| || | || || ||||| Sbjct 77127 ATTTTGGCTTTAACATTCTCAATGTTGTCACTACCTTCGACTTCGAGAGTAATGGTTTTA 77068 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || ||||| |||||||||||||| Sbjct 77067 CCAGTGAGGGTTTTAACAAAAATTTGCAT 77039 >seq64 Length=175976 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||| | ||| || ||||| | ||| ||||| || | ||||| | Sbjct 78239 TCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGAGAGAGTACGACC 78298 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || ||||||||||| |||||||| | || ||||| || | || | ||||||||| Sbjct 78299 ATCCTCTAATTGTTTGCCAGCAAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCTTT 78358 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| ||||||| | ||| |||| | | || || || | || || Sbjct 78359 ATCTTGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCTACTTCGAGAGTAAT 78418 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || |||||||| || ||||||||||| Sbjct 78419 GGTTTTACCTGTGAGAGTTTTAACGAAAATTTGCAT 78454 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| | || || |||| ||| || ||||| | ||| ||||| || Sbjct 77544 CCACCTCTCAATCTAAGTACTAAGTGGAGAGTTGATTCTTTTTGAATATTATAATCTGAG 77603 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || |||||||| || || ||||| |||| |||||||| | || Sbjct 77604 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGG 77663 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || ||| |||| || | ||| | || | |||| || Sbjct 77664 ATACCCTCTTTATCTTGGATTTTGGCTTTTACATTTTCAATGTTATCAGAACCCTCTACT 77723 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||||| |||||| |||||||||||||| Sbjct 77724 TCGAGTGTGATTGTTTTACCGGTTAAAGTTTTTACAAAAATTTGCAT 77770 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||| | ||| || ||||| | ||| ||||| || | ||||| | Sbjct 77783 TCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGAGAGAGTACGACC 77842 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| || |||||||| | || ||||| || | || | ||| ||||| Sbjct 77843 ATCCTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGGATACCCTCTTT 77902 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| ||||||| | ||| |||| | | || || || | || || Sbjct 77903 ATCTTGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCTACTTCGAGGGTAAT 77962 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| | ||||| |||||||||||||| Sbjct 77963 GGTTTTACCGGTCAAGGTTTTTACAAAAATTTGCAT 77998 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||| | ||| || ||||| | ||| ||||| || | ||||| | Sbjct 78011 TCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGAGAGAGTACGACC 78070 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || ||||||||||| || ||||| |||| |||||||| | || | ||| ||||| Sbjct 78071 ATCCTCTAATTGTTTGCCAGCGAAAATTAATCTTTGTTGATCTGGTGGGATACCCTCTTT 78130 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| |||| || | ||| | || | | || || || | || || Sbjct 78131 ATCTTGGATTTTGGCTTTTACATTTTCAATGTTATCAGAACCTTCTACTTCGAGTGTGAT 78190 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| | ||||| |||||||||||||| Sbjct 78191 TGTTTTACCGGTCAAGGTTTTTACAAAAATTTGCAT 78226 >seq175 Length=69793 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| |||| |||||||| | |||||||| || | ||||| | || ||| Sbjct 5342 ACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCC 5401 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || || |||||||||| ||||| || | || | ||||||||| || Sbjct 5402 AATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGA 5461 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| ||| || | ||| | |||| | | || || || | || || || || Sbjct 5462 ATCTTGGTTTTTACATTCTCAATGTTATCGCTACCTTCAACTTCCAAGGTGATGGTCTTA 5521 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || ||||| || ||||||||||| Sbjct 5522 CCAGTGAGGGTTTTGACGAAAATTTGCAT 5550 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| | || ||||||| |||| || ||||| | ||||||||||| Sbjct 5552 CCACCTCTCAATCTAAGAACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAATCGGAT 5611 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 |||||||| | || ||||||||||| || || |||||||||| ||||| || | || Sbjct 5612 AATGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGG 5671 Query 43003 ACACCTTCTTTTTC 43016 | ||||||||| || Sbjct 5672 ATACCTTCTTTGTC 5685 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | ||| |||||||| | ||| |||||||| |||||||| | || ||| Sbjct 5798 ACCAAATGAAGAGTTGATTCCTTTTGGATATTATAATCGGATAATGTACGGCCATCCTCC 5857 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || || ||||| | || ||||| || | || | ||||||||| || Sbjct 5858 AATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGA 5917 Query 43021 ATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| ||||| || | | | |||| | | | || || || | || || || || Sbjct 5918 ATCTTGGTCTTT-ACATTCTCGATGTTGTCACTACCTTCAACTTCAAGAGTAATGGTCTT 5976 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || |||||||| ||||| |||||||| Sbjct 5977 ACCAGTGAGAGTTTTAACAAAGATTTGCAT 6006 >seq73 Length=158548 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 45602 ATTTCCCAAATCGCCCAAGTGACGATTAGAATCGTGTTGTCCACCGTGCTGATTTTGGTG 45661 ||| || ||||| || | |||||||| ||| | | |||||||||| | |||| Sbjct 10246 ATTACCTAAATCACCTACATGACGATTCTCATCATTTGGTCCACCGTGTTCTTTTTTAAA 10305 Query 45662 CGGATTGAAGTGCTCGCCGGCCGACGTACAACCGTTGCTCGTATCACCAAATTCGTGCAC 45721 ||||| |||| | || || || |||| || ||| | ||||||||||| ||||| || Sbjct 10306 TGGATTATAGTGAGCTCCTGCTGATATACATCCATTGGTTGTATCACCAAACTCGTGAAC 10365 Query 45722 ATGAAATCCGTGGTTACCC 45740 ||||||||| || |||||| Sbjct 10366 ATGAAATCCATGTTTACCC 10384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381364966001826