Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq57 183 4e-41 >seq57 Length=183543 Score = 183 bits (202), Expect = 4e-41 Identities = 570/877 (65%), Gaps = 19/877 (2%) Strand=Plus/Plus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| ||| || |||||||| || || | |||| || | ||||| || || ||| Sbjct 135147 GCAATAGAGGCAAGATTACATACAGCAATTTCATCAGGTGATGTGTATTGAATGATCTCA 135206 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 || ||||||||||| | ||||||| || | ||| | |||||| || || || Sbjct 135207 GTACAAAGATTACTGCTACTGATGGTACCGAGATTCTTTTGATTGGATTTAGCATTGCAA 135266 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 ||||||||||| | || || || ||||||||||||| || || || ||||| || | Sbjct 135267 GCATCCTTATACAATATGAATGGTGTACCAGTTTCAACTTGTGACTCCATAATTGCAAAC 135326 Query 71878 CAGACGACTCGAGCCTTTATTATAT-TCTTGTA---TCTCTTTTCTCTTTCGTATTGTGT 71933 || | || | ||||| |||| | ||||| | ||| | | ||| | |||| | Sbjct 135327 CAAAGTTCTTGTGCCTTAATTACACGTCTTGGAAGATCTGGTGTTGCTT-CATATTTTAA 135385 Query 71934 ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT-----CCAGGACATTCATTC 71988 || | | || |||| || |||| | || || ||||| Sbjct 135386 GTAGAGG-----GCACGATGCTCCTCAGAGTGAGTCTCAGAGAGACCTGGTGCCTCATTT 135440 Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 ||||| | | || ||| || |||| | | || |||| |||||||| |||| | | Sbjct 135441 GGACAAAAGAGTGCCCAATCACCATTTTGTTCAACACGTTCCATAAAGATATCACTGACC 135500 Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 || ||||| || || ||||| | ||| ||| || || || || || || || ||| Sbjct 135501 CAGAGAGCGTAGAAGAGGTCTCTTGCTCTCATCTCTTCTTTACCAGTGTTTTTCTTGAGA 135560 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 || | ||| | | | ||| | |||||| || || ||||| | ||| | | || Sbjct 135561 TCAATAAACTCAAATACATCGGCATGCCATGGCTCTAAGTAGACGGCAAAGGCACCTTTT 135620 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 | || || || || || | || | || || | ||| |||| | | |||||| Sbjct 135621 CTCTTACCACCACCTTGGTCAACATAACGTGCAGTATCATTGAAAACACGAAGCATTGGT 135680 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTG 72288 | | ||| ||| | ||||||||| || ||||| ||| | ||||||||| ||| Sbjct 135681 ACCAAACCGTTGCTAGTACCATTGGTACCACGAATATAACTTTGAGCGGCACGAATCTTG 135740 Query 72289 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348 | | | ||| || || || || |||| ||||||||||| ||| ||||||| ||| Sbjct 135741 TGGACGGCAATACCAATACCACCAGCACTTTTTGAGATTAATGCACATTGTTTTAAGGTA 135800 Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTT 72406 || ||||| || ||||| || ||| |||| | || | ||||| || |||| | | Sbjct 135801 TCGTAGATACCATCTATTGAGTCCTCCTTCATTTGAACCAAGAAACAACTTGACATCTGT 135860 Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466 ||||| | || || ||||| || ||||| |||| ||| || || ||| |||| | || Sbjct 135861 GGTGATG--GTGTACCTGCATTGAACAAGGTTGGAGTAGCATGGGTGAACAATTTCTGAG 135918 Query 72467 ACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGA 72526 | || | ||||| || | ||| || || || || ||| || ||||| | || Sbjct 135919 AGAGATGTTTGTAGGTGTTAATGGCACTATCGATGTCTTCACCATGGATACCTACAGAGA 135978 Query 72527 CACGCATTAACATATGCTGAGGTCTTTCAACGATCTT 72563 ||||||| |||||||| || || | ||| || || || Sbjct 135979 CACGCATCAACATATGTTGTGGACGTTCCACAATTTT 136015 Score = 102 bits (112), Expect = 1e-16 Identities = 324/494 (66%), Gaps = 10/494 (2%) Strand=Plus/Plus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 ||||| ||||||||||| || || |||| ||| |||| ||| |||||||| Sbjct 134247 GTACGAAGATAGTACATACCAGTCTTTAAACCCTTCTTCCAAGAGTAGAAATGCATTGAA 134306 Query 70891 GTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATG 70950 || ||||| | | || | || || || ||| || ||| | ||||||||||||||| Sbjct 134307 GTGAGTTTTGCAAAGGTTGGTTCAGCGATGAAAACATTGAAACTTTGACTTTGATCGATG 134366 Query 70951 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 71010 || || || | || |||||||| | |||| || |||| |||||||||| | ||| Sbjct 134367 AAAGCACCACGATCAGCAGCCATATCAATGAGAGTTCTTTGACGAATTTCCCATACGGTT 134426 Query 71011 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCT 71067 || || | | || | || ||||||| | || || || || |||| | Sbjct 134427 TTGTAGAGTTCTTTCAATTCATCTGGAATACCACCAATCGATTGGATTGAACCACGTGCA 134486 Query 71068 GCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTC-TCTCGGTTA-AAACTCTAA 71125 || || || ||| || |||||| |||| ||| | ||| | | | ||| || Sbjct 134487 GCGATGATTTGATTCTTCATCTCTGGTGTCCA-AATGCCCAACTCCATGAGATCCTCCAA 134545 Query 71126 GGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTAC 71185 | || || || | | ||||| |||| ||| || | |||| ||||||| || Sbjct 134546 -CAATTGTTTGTTGACAATTGTGAATTCACCAGCCAAGACACGACGACTGTAAATGTTTG 134604 Query 71186 TGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCA 71245 || || ||||| | | |||||||| || | |||||| |||||| || || |||| Sbjct 134605 AAGTGTATGGTTCAAAGCATTCATTATTACCAAGGATTTGACTAGTTGAAGCGGTTGGCA 134664 Query 71246 TAGGTGCCACCAATAGACTATTTCTAAGACCA-TGTGATCG--GATTTTATCTTTTAGAG 71302 | ||||| | |||||| ||| | |||||| | || | ||| ||||| |||| Sbjct 134665 TTGGTGCGATCAATAGTGAATTACGTAGACCACCTTTATTGACGATCTTATCCTTTAATT 134724 Query 71303 ATTCCCAATTCCAA 71316 |||||||||||| Sbjct 134725 CGTCCCAATTCCAA 134738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671130835927720