Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq64 100 2e-16 seq224 87.8 1e-12 seq175 87.8 1e-12 seq160 87.8 1e-12 >seq64 Length=175976 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || ||||| | || || |||||||| ||||| ||||| || Sbjct 78227 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGA 78286 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || ||||| || ||| ||| || | |||||| ||||| | || Sbjct 78287 GAGAGTACGACCATCCTCTAATTGTTTGCCAGCAAAAATAAGACGTTGTTGGTCTGGTGG 78346 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || |||| ||| || ||| ||| |||| || || Sbjct 78347 GATACCTTCTTTATCTTGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCTAC 78406 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| || || |||||||| |||||||||||||| Sbjct 78407 TTCGAGAGTAATGGTTTTACCTGTGAGAGTTTTAACGAAAATTTGCAT 78454 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || ||||| | || || |||||||| ||||| ||||| || Sbjct 77771 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGA 77830 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || ||||| || ||| ||| || | |||||| ||||| | || Sbjct 77831 GAGAGTACGACCATCCTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGG 77890 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || || ||||| || |||| ||| || ||| ||| |||| || || Sbjct 77891 GATACCCTCTTTATCTTGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCTAC 77950 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || ||||| || || | |||||||| ||||||||||| Sbjct 77951 TTCGAGGGTAATGGTTTTACCGGTCAAGGTTTTTACAAAAATTTGCAT 77998 >seq224 Length=37943 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | ||| || || || | || || |||||||| |||||||||||||| Sbjct 19034 ACCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGA 19093 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | ||| || ||||| || ||| || ||||| | ||| ||||| | || Sbjct 19094 AAGAGTACGACCGTCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGG 19153 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| ||| || ||| ||| | ||| | || ||| Sbjct 19154 GATACCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCAATGTTATCGCTACCTTCAAC 19213 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | || || ||||| || || | ||||| || || |||||||| Sbjct 19214 TTCTAATGTGATTGTTTTACCAGTTAAGGTTTTGACAAAGATTTGCAT 19261 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | ||| || || || | || || |||||||| |||||||||||||| Sbjct 19718 ACCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGA 19777 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || ||||| || ||| ||| ||||| | ||| ||||| | || Sbjct 19778 GAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGG 19837 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || |||| ||| || || ||| ||| | || || Sbjct 19838 GATACCTTCTTTGTCTTGAATCTTGGCC---TTAACATTTTCAATGTTATCTGAACCTTC 19894 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || | || || ||||| || || | |||||||| || |||||||| Sbjct 19895 AACTTCTAATGTGATGGTTTTACCAGTTAAGGTTTTTACAAAGATTTGCAT 19945 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | ||| || || || | || || |||||||| ||||| |||||||| Sbjct 18806 ACCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTATAATCAGA 18865 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || ||||| || ||| ||| ||||| | ||| ||||| | || Sbjct 18866 AAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGG 18925 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || |||| ||| || ||| ||| | || || ||| Sbjct 18926 GATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCAAC 18985 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | || || ||||| || || | ||||| || ||||||||||| Sbjct 18986 TTCTAATGTGATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 19033 >seq175 Length=69793 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | | ||||| || | || || || ||||| || ||||||||||| Sbjct 5323 ACCACCTCTTAATCTGAGTACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 5382 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || |||||||| || ||| || || || | ||| ||||| | || Sbjct 5383 AAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGG 5442 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || |||| |||||| | | ||| | ||| | || ||| Sbjct 5443 AATACCTTCTTTGTCTTGAATCTTGGTTTTTACATTCTCAATGTTATCGCTACCTTCAAC 5502 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || || || || || || || ||||| |||||||||||||| Sbjct 5503 TTCCAAGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 5550 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | | |||||||| | || ||||| ||||| || ||||||||||| Sbjct 6007 ACCACCTCTTAATCTGAGTACCAAATGGAGAGTGGACTCCTTTTGAATGTTGTAATCAGA 6066 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || |||||||| || ||| || || | |||||| ||||| | || Sbjct 6067 AAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGG 6126 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| |||||| ||| ||| |||| || || Sbjct 6127 AATACCTTCCTTGTCTTGAATTTTGGTTTTTACATTTTCAATATTGTCAGAACCTTCTAC 6186 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | ||| || ||||| || || |||||||| || || |||||||| Sbjct 6187 TTCTAAAGTAATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 6234 >seq160 Length=80418 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || ||||| | || || |||||||| || || || || || Sbjct 3531 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGA 3472 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | || || ||||| || ||| ||| ||||| | ||| || || | || Sbjct 3471 TAAAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGG 3412 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| ||| || ||| ||| | || | || ||| Sbjct 3411 AATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATGTTATCAGAGCCTTCAAC 3352 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| || ||||| || || || ||||| |||||||||||||| || Sbjct 3351 TTCGAGAGTAATGGTTTTACCAGTTAGTGTTTTAACGAAAATTTGCATATT 3301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318773726553306