Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq175 150 1e-31 seq64 123 2e-23 seq160 120 2e-22 seq224 105 5e-18 >seq175 Length=69793 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| | || ||||| || ||| ||||||||||| || |||||| Sbjct 5551 ACCACCTCTCAATCTAAGAACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAATCGGA 5610 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| ||| |||| ||||||||||| || || || ||||| | ||| ||||| | || Sbjct 5611 TAATGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGG 5670 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||||||| ||| || | ||| | |||||| ||| || Sbjct 5671 GATACCTTCTTTGTCTTGAATTTTTGTTTTCACATTTTCAATATTATCTGAGCCCTCAAC 5730 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || || ||||| ||||| ||||| ||||| |||||||| Sbjct 5731 TTCGAGAGTGATGGTCTTACCAGTTAATGTCTTAACAAAGATTTGCAT 5778 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| | |||||||| || ||| ||| |||||||| || ||||| Sbjct 6007 ACCACCTCTTAATCTGAGTACCAAATGGAGAGTGGACTCCTTTTGAATGTTGTAATCAGA 6066 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| ||||||||||| || || || || | ||||| ||||| | || Sbjct 6067 AAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGG 6126 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| |||||| ||| || | ||| | | || | || || Sbjct 6127 AATACCTTCCTTGTCTTGAATTTTGGTTTTTACATTTTCAATATTGTCAGAACCTTCTAC 6186 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| || | ||| || ||||| |||||||| Sbjct 6187 TTCTAAAGTAATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 6234 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| | |||||||| || || || ||||| |||||||||||| Sbjct 5779 ACCACCTCTTAATCTGAGTACCAAATGAAGAGTTGATTCCTTTTGGATATTATAATCGGA 5838 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| ||| |||| ||||||||||| || || || || | ||||| ||||| | || Sbjct 5839 TAATGTACGGCCATCCTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGG 5898 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAA--CAGTATCTGCCGGCTCC 44071 | ||||||||||||| ||| || || || | | | || || || || Sbjct 5899 AATACCTTCTTTATCTTGAATCTTGGTCTTTACATTCTCGATGTTGTCACTACC--TTCA 5956 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||||| || ||||| || | ||| || ||||| |||||||| Sbjct 5957 ACTTCAAGAGTAATGGTCTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 6006 >seq64 Length=175976 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| |||||||| || ||||| || || |||||||||||||||||||| Sbjct 77771 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGA 77830 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || |||||||| || ||||| || | ||||| ||||| | || Sbjct 77831 GAGAGTACGACCATCCTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGG 77890 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| ||||||||| ||| ||| |||||| | ||| | || | || || Sbjct 77891 GATACCCTCTTTATCTTGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCTAC 77950 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| ||||| ||||||||||| || || || ||||| |||||||| Sbjct 77951 TTCGAGGGTAATGGTTTTACCGGTCAAGGTTTTTACAAAAATTTGCAT 77998 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| |||||||| || ||||| || || |||||||||||||||||||| Sbjct 78227 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGA 78286 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || |||||||| || ||||| || | ||||| ||||| | || Sbjct 78287 GAGAGTACGACCATCCTCTAATTGTTTGCCAGCAAAAATAAGACGTTGTTGGTCTGGTGG 78346 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||| ||| |||||| | ||| | || | || || Sbjct 78347 GATACCTTCTTTATCTTGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCTAC 78406 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| ||||| |||||||| || | ||| || || || |||||||| Sbjct 78407 TTCGAGAGTAATGGTTTTACCTGTGAGAGTTTTAACGAAAATTTGCAT 78454 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| | || || || || || |||||||||||||||||||| Sbjct 77543 ACCACCTCTCAATCTAAGTACTAAGTGGAGAGTTGATTCTTTTTGAATATTATAATCTGA 77602 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || |||||||| || || || || || | ||| || || | || Sbjct 77603 GAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGG 77662 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| ||||||||| ||||| ||| || | ||| |||| | ||| || Sbjct 77663 GATACCCTCTTTATCTTGGATTTTGGCTTTTACATTTTCAATGTTATCAGAACCCTCTAC 77722 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || |||||||||||||||||||| || ||||| |||||||| Sbjct 77723 TTCGAGTGTGATTGTTTTACCGGTTAAAGTTTTTACAAAAATTTGCAT 77770 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| |||||||| || ||||| || || |||||||||||||||||||| Sbjct 77999 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGA 78058 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || |||||||| || || || || || | ||| || || | || Sbjct 78059 GAGAGTACGACCATCCTCTAATTGTTTGCCAGCGAAAATTAATCTTTGTTGATCTGGTGG 78118 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| ||||||||| ||||| ||| || | ||| |||| | || || Sbjct 78119 GATACCCTCTTTATCTTGGATTTTGGCTTTTACATTTTCAATGTTATCAGAACCTTCTAC 78178 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || |||||||||||||| || || || ||||| |||||||| Sbjct 78179 TTCGAGTGTGATTGTTTTACCGGTCAAGGTTTTTACAAAAATTTGCAT 78226 >seq160 Length=80418 Score = 120 bits (132), Expect = 2e-22 Identities = 172/241 (71%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| |||||||| || ||||| || || ||||||||||| ||||| || Sbjct 3531 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGA 3472 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || |||||||| || ||||| || || | ||| || || | || Sbjct 3471 TAAAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGG 3412 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||||||| ||| || | ||| |||| | || || Sbjct 3411 AATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATGTTATCAGAGCCTTCAAC 3352 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCTTTG 44133 |||| ||||| |||||||| |||| || || || || |||||||| | | || |||| Sbjct 3351 TTCGAGAGTAATGGTTTTACCAGTTAGTGTTTTAACGAAAATTTGCATATTGTGT-TTTG 3293 Query 44134 T 44134 | Sbjct 3292 T 3292 Score = 109 bits (120), Expect = 4e-19 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| |||||||| || ||||| || || ||||||||||| |||||||| | Sbjct 3757 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATGTTATAATCTGAT 3698 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || ||| |||| || ||||| || || ||||| || || | ||| || | ||| | Sbjct 3697 AAAGTACGACCATCTTCTAATTGCTTACCAGCAAAAATTAATCTTTGTTGAT-CTGGTGG 3639 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||||| ||||||| || || | ||| | |||| | || || Sbjct 3638 ATACCTTCTTTATCTTGAATTTTTGCCTTTACATTTTCAATATTATCAGAACCTTCAACT 3579 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || |||||||| ||||| || || || || |||||||| Sbjct 3578 TCCAATGTGATGGTTTTACCAGTTAAGGTTTTAACGAAAATTTGCAT 3532 >seq224 Length=37943 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| || || || || || || |||||||||||||||||||| Sbjct 18806 ACCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTATAATCAGA 18865 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || |||||||| || ||||| || || | ||| ||||| | || Sbjct 18866 AAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGG 18925 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||| || ||| || | ||| |||||| || || Sbjct 18926 GATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCAAC 18985 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || |||||||| ||||| || || ||||| |||||||| Sbjct 18986 TTCTAATGTGATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 19033 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| || || || || || || |||||||||||||| ||||| Sbjct 19034 ACCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGA 19093 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| | || || |||||||| || || || || || | ||| ||||| | || Sbjct 19094 AAGAGTACGACCGTCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGG 19153 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA- 44072 | ||||||||| ||| ||||||| |||||| | ||| |||| || || || Sbjct 19154 GATACCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCAATGTTATC-GCTACCTTCAA 19212 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || ||||||||||| ||||| || || ||||| |||||||| Sbjct 19213 CTTCTAATGTGATTGTTTTACCAGTTAAGGTTTTGACAAAGATTTGCAT 19261 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| || || || || || || |||||||||||||| ||||| Sbjct 19718 ACCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGA 19777 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || |||||||| || ||||| || || | ||| ||||| | || Sbjct 19778 GAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGG 19837 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||| || || || | ||| |||||| || || Sbjct 19838 GATACCTTCTTTGTCTTGAATCTTGGCCTTAACATTTTCAATGTTATCTGAACCTTCAAC 19897 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || |||||||| ||||| || || ||||| |||||||| Sbjct 19898 TTCTAATGTGATGGTTTTACCAGTTAAGGTTTTTACAAAGATTTGCAT 19945 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| |||||||| || || || || || |||||||||||||| ||||| Sbjct 19946 ACCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGA 20005 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| | || || |||||||| || ||||| || | ||||| || || | || Sbjct 20006 AAGAGTACGACCGTCTTCTAATTGTTTACCGGCAAAAATAAGACGTTGTTGATCTGGTGG 20065 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||||| ||| || | ||| |||| | || || Sbjct 20066 AATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGTTATCAGAACCTTCAAC 20125 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| ||||| || || ||||| |||||||| Sbjct 20126 TTCTAAGGTAATAGTTTTACCAGTTAATGTTTTAACAAAAATTTGCAT 20173 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| |||||||| || || || || || |||||||||||||| ||||| Sbjct 19490 ACCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGA 19549 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || |||||||| || || || || | ||||| || || | || Sbjct 19550 AAGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGG 19609 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTAT--CTGCCGGCTCC 44071 | ||||||||| ||| ||||| ||| || | ||| ||| || || || Sbjct 19610 GATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGTTATCACTACC--TTCA 19667 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||||| || |||||||| ||||| || ||||| |||||||| Sbjct 19668 ACCTCAAGAGTAATGGTCTTACCGGTCAAAGTTTTAACAAAAATTTGCAT 19717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354773289119556