Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq160 109 5e-19 seq224 104 2e-17 seq175 98.7 8e-16 seq64 98.7 8e-16 seq62 89.7 4e-13 >seq160 Length=80418 Score = 109 bits (120), Expect = 5e-19 Identities = 175/250 (70%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 19959 ATTTAAATATATTTTATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATT 20018 |||| | | |||||| | | ||||| |||| ||| || || || ||||| || || |||| Sbjct 3780 ATTTTATTTTATTTTTTTAATTTCCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATT 3721 Query 20019 CTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAA 20078 ||||||| ||||| ||||| | ||| | |||||| ||||| || || ||| ||| Sbjct 3720 CTTTTTGAATGTTATAATCTGATAAAGTACGACCATCTTCTAATTGCTTACCAGCAAAAA 3661 Query 20079 TAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGC 20138 | | || |||||||| | | | |||||||| || ||||||| || || | Sbjct 3660 TTAATCTTTGTTGATC-TGGTGGATACCTTCTTTATCTTGAATTTTTGCCTTTACATTTT 3602 Query 20139 CAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAA 20198 ||| | ||| | ||| ||||| || |||||||| || || || ||||| || | Sbjct 3601 CAATATTATCAGAACCTTCAACTTCCAATGTGATGGTTTTACCAGTTAAGGTTTTAACGA 3542 Query 20199 AAATTTGCAT 20208 |||||||||| Sbjct 3541 AAATTTGCAT 3532 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || || || ||||| || || ||||||||||| ||||| || || Sbjct 3530 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGAT 3471 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| |||||||| || ||| |||| | || |||||||| || Sbjct 3470 AAAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGA 3411 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATC---GCCAGGTTCC 20158 | |||||||| || ||||||| ||| || | ||| ||| ||| ||| Sbjct 3410 ATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATGTTATCAGAGCC---TTCA 3354 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 ||| | ||||||||||| || || | ||||| || ||||||||||| || Sbjct 3353 ACTTCGAGAGTAATGGTTTTACCAGTTAGTGTTTTAACGAAAATTTGCATATT 3301 >seq224 Length=37943 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || || || || || || || ||||||||||| || |||||||| Sbjct 19491 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19550 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| |||||||| || || ||||||| | |||||||| || Sbjct 19551 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGG 19610 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||| ||| || | ||| ||| | | ||| Sbjct 19611 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGTTATCACTACCTTCAACC 19670 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | |||||||| || |||||||| ||||| |||||||||||||| Sbjct 19671 TCAAGAGTAATGGTCTTACCGGTCAAAGTTTTAACAAAAATTTGCAT 19717 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || || || || || || || ||||||||||| || |||||||| Sbjct 19947 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 20006 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||| |||||||| || ||| ||||||| | |||||||| || Sbjct 20007 AGAGTACGACCGTCTTCTAATTGTTTACCGGCAAAAATAAGACGTTGTTGATCTGGTGGA 20066 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||| ||| || | ||| ||| | ||| | Sbjct 20067 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGTTATCAGAACCTTCAACT 20126 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | |||||| ||||| || || || ||||| ||||||||||||||| Sbjct 20127 TCTAAGGTAATAGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATT 20174 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| ||||| || || || || || ||||||||||| || |||||||| Sbjct 19035 CCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19094 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||| |||||||| || || |||| | || ||||| || || Sbjct 19095 AGAGTACGACCGTCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGG 19154 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||||| ||| || | ||| ||||| | ||| | Sbjct 19155 ATACCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCAATGTTATCGCTACCTTCAACT 19214 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| || || || ||||||||||| |||||||| Sbjct 19215 TCTAATGTGATTGTTTTACCAGTTAAGGTTTTGACAAAGATTTGCAT 19261 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| ||||| || || || || || ||||||||||| || || ||||| Sbjct 18807 CCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTATAATCAGAA 18866 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| |||||||| || ||| |||| | || ||||| || || Sbjct 18867 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGG 18926 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||| || ||| || | ||| ||| | ||| | Sbjct 18927 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCAACT 18986 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || |||||||| || || || |||||||||||||||||||| Sbjct 18987 TCTAATGTGATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 19033 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || || || || || || || ||||||||||| || |||||||| Sbjct 19263 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19322 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||| |||||||| || || ||||||| | |||||||| || Sbjct 19323 AGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGG 19382 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||| || || | ||| ||| | | ||| | Sbjct 19383 ATACCTTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATGTTATCACTACCTTCAACT 19442 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || |||||||| || || || ||||| ||||| |||||||| Sbjct 19443 TCTAAAGTGATGGTTTTACCAGTTAAGGTTTTTACAAAGATTTGCAT 19489 >seq175 Length=69793 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || | ||||| || || || ||||| ||||| ||||||||||| Sbjct 5324 CCACCTCTTAATCTGAGTACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAA 5383 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||||||||| || || |||| | || ||||| || || Sbjct 5384 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGA 5443 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||| || ||| || | ||| ||||| | ||| | Sbjct 5444 ATACCTTCTTTGTCTTGAATCTTGGTTTTTACATTCTCAATGTTATCGCTACCTTCAACT 5503 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || || | |||||||| ||||||||||| Sbjct 5504 TCCAAGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 5550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || | |||||||| || || || || ||||| ||||||||||| Sbjct 6008 CCACCTCTTAATCTGAGTACCAAATGGAGAGTGGACTCCTTTTGAATGTTGTAATCAGAA 6067 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||||||||| || || ||||||| | ||||| || || Sbjct 6068 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGA 6127 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| |||||| ||| || | ||| | || | ||| | Sbjct 6128 ATACCTTCCTTGTCTTGAATTTTGGTTTTTACATTTTCAATATTGTCAGAACCTTCTACT 6187 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | ||||||||||| || || | ||||| ||||| ||||||||| Sbjct 6188 TCTAAAGTAATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCATT 6235 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| || || | || ||||| || || ||||||||||| |||||||||||| Sbjct 5552 CCACCTCTCAATCTAAGAACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAATCG--G 5609 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| | | || ||||||||||||||| || || |||| | || ||||| || | Sbjct 5610 ATAATGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTG 5669 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATC---GCCAGGTT 20156 | | ||||||||||| ||||||| |||||| | ||| | ||| ||| | Sbjct 5670 GGATACCTTCTTTGTCTTGAATTTTTGTTTTCACATTTTCAATATTATCTGAGCC---CT 5726 Query 20157 CCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | ||| | || ||||| || || || || || || ||||| |||||||| Sbjct 5727 CAACTTCGAGAGTGATGGTCTTACCAGTTAATGTCTTAACAAAGATTTGCAT 5778 >seq64 Length=175976 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || || || ||||| || || ||||||||||| || || ||||| Sbjct 77772 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGAG 77831 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||| || |||||||| || ||| ||||||| | ||||| || || Sbjct 77832 AGAGTACGACCATCCTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGG 77891 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || ||||| || ||| ||| ||| || | ||| || | ||| | Sbjct 77892 ATACCCTCTTTATCTTGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCTACT 77951 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | |||||||||||| |||||||| ||||| |||||||||||||| Sbjct 77952 TCGAGGGTAATGGTTTTACCGGTCAAGGTTTTTACAAAAATTTGCAT 77998 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || || || ||||| || || ||||||||||| || || ||||| Sbjct 78228 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGAG 78287 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||| || ||||||||||| ||| ||||||| | ||||| || || Sbjct 78288 AGAGTACGACCATCCTCTAATTGTTTGCCAGCAAAAATAAGACGTTGTTGGTCTGGTGGG 78347 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || ||| ||| ||| || | ||| || | ||| | Sbjct 78348 ATACCTTCTTTATCTTGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCTACT 78407 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||||||||||| || || | ||||| || ||||||||||| Sbjct 78408 TCGAGAGTAATGGTTTTACCTGTGAGAGTTTTAACGAAAATTTGCAT 78454 >seq62 Length=176758 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || | || ||||| || || ||||||||||| |||||||| || Sbjct 77265 CCACCTCTTAATCTAAGAACTAAATGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGAG 77206 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||| |||||||| || || ||||||| | |||||||| || Sbjct 77205 AGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 77146 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||| ||| || | ||| || | | ||| | Sbjct 77145 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTCTCAATGTTGTCACTACCTTCGACT 77086 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||||||||||| || || | ||||| |||||||||||||| Sbjct 77085 TCGAGAGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 77039 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 || || |||| ||| || | || || || || || ||||||||||| |||||||| || Sbjct 77724 TTGCCACCTCTTAATCTAAGGACTAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCA 77665 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 | ||| | ||||| |||||||| || || ||||||| | |||||||| Sbjct 77664 GAGAGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGT 77605 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | ||||||||||| ||||| ||| || | ||| | || | | ||| Sbjct 77604 GGAATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATATTGTCACTACCTTCA 77545 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||||||||||| || || | ||||| |||||||||||||| Sbjct 77544 ACCTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 77495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419582101622157