Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq103 230 4e-55 seq254 87.8 3e-12 >seq103 Length=128160 Score = 230 bits (254), Expect = 4e-55 Identities = 395/564 (70%), Gaps = 12/564 (2%) Strand=Plus/Minus Query 193634 AGTTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGA 193693 |||| | || | || || |||||| | || || ||||||||||||||||| || || || Sbjct 27922 AGTTAATCCAACAGAAATATATAATTTAGGAGCACAAAGTCATGTTAAAGTATCATTCGA 27863 Query 193694 GATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGT 193753 ||| | ||||||||| | ||||||||| ||||||| |||| | || | || ||| | Sbjct 27862 TATGTCTGAGTATACTGGTGATGTTGATGGTTTAGGATGTCTTCGTTTATTGGATGCAAT 27803 Query 193754 TCGTATGTTG-GGAATGGAGAAAGATGTTCGCAT-CTATCAGGCATCTACCAGCGAACTG 193811 ||||| |||| ||| | |||||| | | || || ||| || || || ||| ||| | Sbjct 27802 TCGTA-GTTGTGGATTAGAGAAAAAAG-TCAAATACTACCAAGCTTCAACCTCTGAATTA 27745 Query 193812 TATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCT 193871 |||||| |||| || | |||| |||||| || || ||||| ||||||| || || Sbjct 27744 TATGGTAAAGTTCAAGAGATCCCACAATCAGAGACTACTCCATTCTATCCACGTTCACCA 27685 Query 193872 TATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGA 193931 || | ||| ||||| |||| |||||||| | || |||||||| |||| | Sbjct 27684 TACGCTGTTGCAAAACAATATGCATATTGGATTGTAGTAAACTATCGTGAAGCATACGAT 27625 Query 193932 TTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTT 193991 || |||| || ||||||| | |||||||| || || ||| | |||||| || ||| Sbjct 27624 ATCTACGCATGTAATGGTATTTTATTCAATCATGAGTCACCACGTAGAGGTCCAACCTTT 27565 Query 193992 GTAACTCGTAAGATTACACAAGGTT--TATCTAAGATCTCTGTTGGATTACAGA--AGAT 194047 |||||| | ||||| ||| | || | || || | ||| || ||| | || Sbjct 27564 GTAACTAGAAAGAT--CACCCGTTTCGTTGCTGGTATTGCATGTGG--TAAAGATGAAAT 27509 Query 194048 TCTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGA 194107 || || | |||||| | ||||| || | |||||||| || || | ||||| || || Sbjct 27508 ACTCTACTTGGGTAATATCAATGCCAAACGTGATTGGGGCCATGCTAGAGATTACGTCGA 27449 Query 194108 AGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGA 194167 ||| |||||||||||||| ||||| || |||| || |||| || || || || ||||| Sbjct 27448 AGCAATGTGGTTAATGTTACAACAAGAGAAACCAGAGGATTTCGTCATCGCCACTGGTGA 27389 Query 194168 ACAGTATTCTGTTAGAGACTTTGT 194191 | |||| || | || ||||| Sbjct 27388 AACTCATTCAGTACGTGAATTTGT 27365 >seq254 Length=21133 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/181 (71%), Gaps = 14/181 (8%) Strand=Plus/Plus Query 144937 GGATATGAGGAACCTATTTTAGTATCTGGAACTGATGGTGTAGGAACTAAAATTGATATT 144996 |||| | | || || ||||||||||| || || |||||||| || || ||| | | ||| Sbjct 8898 GGATTTAAAGATCCAATTTTAGTATCAGGTACAGATGGTGTTGGTACAAAATTAAAGATT 8957 Query 144997 GCACAAG---CCGCTAATGACTATACAACTATTGGTATAGATCTTGTTGCCATGTGTGTG 145053 || |||| | || | | || | ||||||||| ||| | || || |||||||| Sbjct 8958 GCTCAAGAACTTGGTATTCATGAT---AGTATTGGTATCGATTTAGTGGCAATGTGTGTC 9014 Query 145054 AATGATATAATAACCTGT----GGTGCGAAACCATTATACTTCTTAGATTATATTTCTAC 145109 |||||| | | ||| ||||| ||||||||||||| ||||||||| || |||| Sbjct 9015 AATGATGTTGT----TGTTCAAGGTGCTGAACCATTATACTTTTTAGATTATTTTGCTAC 9070 Query 145110 T 145110 | Sbjct 9071 T 9071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807545135843320