Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq57 284 3e-71 seq18 138 3e-27 >seq57 Length=183543 Score = 284 bits (314), Expect = 3e-71 Identities = 638/946 (67%), Gaps = 13/946 (1%) Strand=Plus/Minus Query 363373 GATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATC 363432 ||| |||| || ||| | || || | || || | ||| || || || |||||| Sbjct 136081 GATTTCGACTACGATTTCTTTGGCTTCAAAACATTAGAGCGTTCATATCTTCATCGTATT 136022 Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492 |||| | ||||| ||||| || || |||||||| |||||||| || | ||||||||| Sbjct 136021 GGTGGTAAAATTGTGGAACGTCCACAACATATGTTGATGCGTGTCTCTGTAGGTATCCAT 135962 Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACG 363552 | || | ||| || ||| | || || || | ||| | | ||||| Sbjct 135961 GGTGAAGACATCGATAGTGCCATTAACACCTACAAACATCTCTCTCAGAAATTGTTCACC 135902 Query 363553 CACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTT 363612 || || || ||||| ||| |||||| || || | ||||||||||| ||| ||| Sbjct 135901 CATGCTACTCCAACCTTGTTCAATGCAGGTACACCATCACCACAGATGTCAAGTTG-TTT 135843 Query 363613 CTTC-TAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA-ATTGTG 363670 ||| | |||||||||| || || || || ||||||| || || ||||| | | |||| Sbjct 135842 CTTGGTTCAAATGAAGGAGGACTCAATAGATGGTATCTACGATAC-CTTAAAACAATGTG 135784 Query 363671 CTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGA 363730 | | || || || | ||| || || |||||| | | ||||||| ||||||| Sbjct 135783 CATTAATCTCAAAAAGTGCTGGTGGTATTGGTATTGCCGTCCACAAGATTCGTGCCGCTC 135724 Query 363731 ACAGTTACATTCGCGGCACAGGGGGATACTCG-AATGGGCTGGTTCCCATGCTTCGTGTG 363789 | ||||| ||||| || || || |||| | || || |||| || ||||||||||| Sbjct 135723 AAAGTTATATTCGTGGTACCAATGG-TACTAGCAACGGTTTGGTACCAATGCTTCGTGTT 135665 Query 363790 TTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCT 363849 || | ||||||| | || || ||||| ||||| || ||| | ||||| || ||||| Sbjct 135664 TTCAATGATACTGCACGTTATGTTGACCAAGGTGGTGGTAAGAGAAAAGGTGCCTTTGCC 135605 Query 363850 ATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACG 363909 | || | ||||| ||||||||| | ||||||||| |||| ||| ||||||||| Sbjct 135604 GTCTACTTAGAGCCATGGCATGCCGATGTATTTGAGTTTATTGATCTCAAGAAAAACACT 135545 Query 363910 GGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTT 363969 || ||||| || || | ||| | || || ||||| || || ||||| ||| ||| Sbjct 135544 GGTAAAGAAGAGATGAGAGCAAGAGACCTCTTCTACGCTCTCTGGGTCAGTGATATCTTT 135485 Query 363970 ATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGT 364029 ||| | || || || | | ||||| |||||||||| ||| | || |||||| Sbjct 135484 ATGGAACGTGTTGAACAAAATGGTGATTGGGCACTCTTTTGTCCAAATGAGGCACCAGGT 135425 Query 364030 CTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGA 364089 || || || ||| || || ||| || ||| ||| |||||| | | Sbjct 135424 CTCTCTGAGACTCACTCTGAGGAGCATCGTGCCCTCTACTTAAAATATGAAGC-AACACC 135366 Query 364090 AAGGCTCGTAAGAC----AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCA 364145 | || ||||| |||| ||||| | || |||||||| || ||||| || || Sbjct 135365 AGATCTTCCAAGACGTGTAATTAAGGCACAAGAACTTTGGTTTGCAATTATGGAGTCACA 135306 Query 364146 GATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCA 364205 |||| || || ||||| | || ||||| || ||| | ||||| || ||||| || Sbjct 135305 AGTTGAAACTGGTACACCATTCATATTGTATAAGGATGCTTGCAATGCTAAATCCAATCA 135246 Query 364206 GCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCG 364264 || | || ||||| | |||| || || || || ||||| ||||| ||| ||||||| Sbjct 135245 AAAGAATCTCGGTACCA-TCAGTAGCAGTAATCTTTGTACTGAGATCATTCAATACACAT 135187 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 | || || || | ||| |||||||| ||||| || || || ||||| Sbjct 135186 CACCTGATGAAATTGCTGTATGTAATCTTGCCTCTATTGCACTTCC 135141 Score = 122 bits (134), Expect = 2e-22 Identities = 175/245 (71%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAA 364974 |||||||| | |||||||| || |||||| | || ||| || ||||||| Sbjct 134506 ATGAAGAATCAAATCATCGCTGCACGTGGTTCAATCCAATCGATTGGTGGTATTCCAGAT 134447 Query 364975 GATCTGAAGCCTATTTACAAAACCGTATGGGAAATT--TCCATGCGAACTCTCATTGATA 365032 || |||| | ||||||||||||||||||||| || | | |||||||||||||| Sbjct 134446 GAATTGAAAGAACTCTACAAAACCGTATGGGAAATTCGTCAAAG--AACTCTCATTGATA 134389 Query 365033 TGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTC 365092 |||| || ||||| |||||||| ||| ||| || || || || || ||||| || Sbjct 134388 TGGCTGCTGATCGTGGTGCTTTCATCGATCAAAGTCAAAGTTTCAATGTTTTCATCGCTG 134329 Query 365093 AGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGA 365152 | ||||||| || || || || || |||||||||||| ||||| ||| | |||| Sbjct 134328 AACCAACCTTTGCAAAACTCACTTCAATGCATTTCTACTCTTGGAAGAAGGGTTTAAAGA 134269 Query 365153 CAGGT 365157 | ||| Sbjct 134268 CTGGT 134264 >seq18 Length=332127 Score = 138 bits (152), Expect = 3e-27 Identities = 320/476 (67%), Gaps = 20/476 (4%) Strand=Plus/Minus Query 145314 ATAAAACGAGGAAAACGAAGAGCAATACCCTTATTTGGGTCAACGATTCCATGTCCTGCC 145373 || ||||| || ||||| | ||| ||||| |||||||| || | || ||| | | || Sbjct 330418 ATGAAACGTGGGAAACGCAAAGCTATACCTTTATTTGGATCCAACATACCAGTTGCAGCG 330359 Query 145374 ATGTGAACCGGAGAAATTGACAAATCTGCCGACAATACTTCCCATACTTGAGTTGGACTA 145433 | ||||| ||||| ||||| ||||| || | |||||| ||||| ||||||||||| Sbjct 330358 GTATGAACTGGAGAGATTGATAAATCGGCGGCCAATACCTCCCAAACTTGAGTTGGTGAG 330299 Query 145434 AACCAAACATCTGGTTTAAGCGATGGTACATCTGCGACA---TAGTAATCAGACGGTTTC 145490 ||||| ||||| ||||||| || ||| || | | | | || | |||| Sbjct 330298 AACCATACATCAGGTTTAATTGA------ATCAGCAATACGGAATTGATTACGTGGTTGA 330245 Query 145491 TGTGGTACAATATGTGGCGTAAGACTGTCGGACAATTGAATTAAATCTTCATCTGAAAAT 145550 | |||| | || | ||| | | || || | | | || | |||||| || || Sbjct 330244 TTGATTACATGAGGTTTC--AAGTC-ATTGGTGAAATTAGTCAATTGTTCATCAGAGAAA 330188 Query 145551 CCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTCTGGATCAT-ACACCGCAAG 145609 || || || || || || | |||||||| |||| | || | ||| | ||| ||| Sbjct 330187 CCTGTACCAATTTTACAAAGTGTTTGGAACTCTTCATTGTTTTCATCGTAACAGGCCAAC 330128 Query 145610 AAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGTATACC---CCGCAATTGG 145666 || ||| || ||||| |||||| | ||| || ||| ||||| | ||||||| Sbjct 330127 AA-GTAAGCGCCATAGGTACCAGTTCTTTTACCTTTACC---ATACCAAGCACCAATTGG 330072 Query 145667 TACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTTAAGTTTTAGCCAATT 145726 || | ||| ||||||| ||| || | |||||| ||||||| |||| |||||| Sbjct 330071 CACTAAATCCAAACTATCGGTCATACCTTGCATATAATCTTTTTTAATCTTTAACCAATT 330012 Query 145727 GAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAATGATTTTACCATTA 145782 | |||||| |||||||||||| | || || || | ||| | ||| ||||||| Sbjct 330011 GTAAGAACGACGTGATGGTTCATAGATTGATTTCTCTTTCAAAGTTTTCACCATTA 329956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303336950879654