Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq245 100 6e-16 seq83 100 6e-16 seq36 100 6e-16 seq10 100 6e-16 seq84 98.7 2e-15 seq21 98.7 2e-15 seq17 98.7 2e-15 seq95 86.0 1e-11 seq62 86.0 1e-11 seq47 86.0 1e-11 >seq245 Length=24622 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 23610 AGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 23669 Query 142563 CCCCACATCGGGC 142575 |||| | | |||| Sbjct 23670 CCCCCCGTTGGGC 23682 >seq83 Length=51947 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 35815 AGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 35874 Query 142563 CCCCACATCGGGC 142575 |||| | | |||| Sbjct 35875 CCCCCCGTTGGGC 35887 >seq36 Length=221538 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 185727 AGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 185668 Query 142563 CCCCACATCGGGC 142575 |||| | | |||| Sbjct 185667 CCCCCCGTTGGGC 185655 >seq10 Length=392337 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 180886 AGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 180945 Query 142563 CCCCACATCGGGC 142575 |||| | | |||| Sbjct 180946 CCCCCCGTTGGGC 180958 >seq84 Length=146601 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 78155 GCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAGC 78214 Query 142564 CCCACATCGGGC 142575 ||| | | |||| Sbjct 78215 CCCCCGTTGGGC 78226 >seq21 Length=320491 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 219298 GCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAGC 219239 Query 142564 CCCACATCGGGC 142575 ||| | | |||| Sbjct 219238 CCCCCGTTGGGC 219227 >seq17 Length=343861 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 327097 GCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAGC 327038 Query 142564 CCCACATCGGGC 142575 ||| | | |||| Sbjct 327037 CCCCCGTTGGGC 327026 >seq95 Length=132837 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||| | |||||||||||||||||||| || || |||| || ||||||| ||||||| Sbjct 64290 ATAGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCG 64231 Query 142561 AGCCCCACATCGGGC 142575 |||||| | | |||| Sbjct 64230 AGCCCCCCTTTGGGC 64216 >seq62 Length=176758 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||| | |||||||||||||||||||| || || |||| || ||||||| ||||||| Sbjct 1152 ATAGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCG 1093 Query 142561 AGCCCCACATCGGGC 142575 |||||| | | |||| Sbjct 1092 AGCCCCCCTTTGGGC 1078 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||| | |||||||||||||||||||| || || |||| || ||||||| ||||||| Sbjct 35315 ATAGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCG 35256 Query 142561 AGCCCCACATCGGGC 142575 |||||| | | |||| Sbjct 35255 AGCCCCCCTTTGGGC 35241 >seq47 Length=209446 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||| | |||||||||||||||||||| || || |||| || ||||||| ||||||| Sbjct 68535 ATAGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCG 68476 Query 142561 AGCCCCACATCGGGC 142575 |||||| | | |||| Sbjct 68475 AGCCCCCCTTTGGGC 68461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027823670348477