Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq160 111 1e-19 seq64 107 1e-18 seq224 98.7 7e-16 >seq160 Length=80418 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| |||||||| || |||||||| |||| || ||||||||||| | ||| |||| Sbjct 3300 CAATATGCAAATTTTCGTTAAAACACTAACTGGTAAAACCATTACTCTCGAAGTTGAAGG 3359 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || | | | || |||| ||||||| |||||||| ||| | || | | Sbjct 3360 CTCTGATAACATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCACCAGA 3419 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||| ||| | || |||||||| |||||| |||||||| ||| | | || || Sbjct 3420 TCAACAAAGATTAATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTTTATCAGACTA 3479 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || ||||| ||||||||| | || ||| | ||| |||| || Sbjct 3480 TAACATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 3530 >seq64 Length=175976 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| || || || |||||||||||| | ||| |||| | Sbjct 77998 ATGCAAATTTTTGTAAAAACCTTGACCGGTAAAACCATTACCCTCGAAGTAGAAGGTTCT 77939 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || | || ||| ||| |||||||||||| | || | ||||| Sbjct 77938 GACAACATTGAAAATGTCAAAGCAAAGATTCAAGATAAAGAGGGTATCCCACCAGACCAA 77879 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | ||||| |||||||| |||||| |||| ||| ||| | | ||||| ||| Sbjct 77878 CAACGTCTTATTTTTGCTGGTAAACAATTAGAGGATGGTCGTACTCTCTCAGATTATAAT 77819 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||| ||||||||| | || ||| | ||| |||| || Sbjct 77818 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 77772 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || ||||||| | || || ||||||||||| | ||| |||| | Sbjct 78454 ATGCAAATTTTCGTTAAAACTCTCACAGGTAAAACCATTACTCTCGAAGTAGAAGGTTCT 78395 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || | || ||| ||| |||||||| ||| | || | ||||| Sbjct 78394 GACAACATTGAAAATGTCAAAGCAAAGATTCAAGATAAAGAAGGTATCCCACCAGACCAA 78335 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | ||||| ||||||||||||||| |||| ||| ||| | | ||||| ||| Sbjct 78334 CAACGTCTTATTTTTGCTGGCAAACAATTAGAGGATGGTCGTACTCTCTCAGATTATAAT 78275 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||| ||||||||| | || ||| | ||| |||| || Sbjct 78274 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 78228 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| || || || ||||| || || | ||| |||| | Sbjct 78226 ATGCAAATTTTTGTAAAAACCTTGACCGGTAAAACAATCACACTCGAAGTAGAAGGTTCT 78167 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || | || ||||| |||||||||||| | || | | ||| Sbjct 78166 GATAACATTGAAAATGTAAAAGCCAAAATCCAAGATAAAGAGGGTATCCCACCAGATCAA 78107 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | || || |||||||||||| |||| ||| ||| | | ||||| ||| Sbjct 78106 CAAAGATTAATTTTCGCTGGCAAACAATTAGAGGATGGTCGTACTCTCTCAGATTATAAT 78047 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||| ||||||||| | || ||| | ||| |||| || Sbjct 78046 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 78000 >seq224 Length=37943 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| ||||| || |||||||| || | ||| |||| || Sbjct 19945 ATGCAAATCTTTGTAAAAACCTTAACTGGTAAAACCATCACATTAGAAGTTGAAGGTTCA 19886 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || ||||| || ||| || ||||| ||| | || | ||||| Sbjct 19885 GATAACATTGAAAATGTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAA 19826 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | || |||||||| |||||| |||||||| ||| | | ||||||||| Sbjct 19825 CAAAGATTAATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAT 19766 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||| ||||| || | || || | ||| |||| || Sbjct 19765 ATTCAAAAAGAATCAACTCTCCACTTAGTCTTGAGATTAAGAGGTGG 19719 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||||||||| || ||||| |||||| | ||| |||| | Sbjct 20174 AATGCAAATTTTTGTTAAAACATTAACTGGTAAAACTATTACCTTAGAAGTTGAAGGTTC 20115 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || | | | || |||| ||||| || ||||| ||| | || | | || Sbjct 20114 TGATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 20055 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | ||||| ||||| || |||||| ||||||| ||| | | |||||||| Sbjct 20054 ACAACGTCTTATTTTTGCCGGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACAA 19995 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||| || ||||| ||||| || | || ||| | ||| |||| || Sbjct 19994 TATTCAAAAAGAATCAACTCTCCACTTAGTCTTAAGATTAAGAGGTGG 19947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358120448447938