Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq224 109 6e-19 seq175 102 9e-17 seq64 82.4 8e-11 >seq224 Length=37943 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | ||| || || || | || || ||||||||||||||||||| Sbjct 19034 ACCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGA 19093 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| |||| || ||||||||||| || | || || ||||| | ||| Sbjct 19094 AAGAGTACGACCGTCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGG 19153 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || |||| | ||| |||||| ||||| | | | | ||||| ||| | Sbjct 19154 GATACCTTCTTTGT-CTTGAATTTTTGCTTTGACATTTTCAATGTTATCGCTACCTTCAA 19212 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| ||||| || |||| || || |||||||||||||| Sbjct 19213 CTTCTAATGTGATTGTTTTACCAGTTAAGGTTTTGACAAAGATTTGCAT 19261 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | || || || || | || || ||||||||||||||||||| Sbjct 19262 ACCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGA 19321 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| |||| || ||||| ||||| || || || || || || | ||| Sbjct 19322 AAGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGG 19381 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || ||||| |||||| || | | | | | || || ||| || Sbjct 19382 GATACCTTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATGTTATCACTACCTTCAAC 19441 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || |||| || ||||||||||||||||| Sbjct 19442 TTCTAAAGTGATGGTTTTACCAGTTAAGGTTTTTACAAAGATTTGCAT 19489 >seq175 Length=69793 Score = 102 bits (112), Expect = 9e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | | |||||||| | ||| |||||||||||| |||||||||| Sbjct 6007 ACCACCTCTTAATCTGAGTACCAAATGGAGAGTGGACTCCTTTTGAATGTTGTAATCAGA 6066 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || | || ||||||||||| || || || || ||||| | ||| Sbjct 6067 AAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGG 6126 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||||| | ||| |||| | ||| | | | | |||| ||| | Sbjct 6127 AATACCTTCCTTGT-CTTGAATTTTGGTTTTTACATTTTCAATATTGTCAGAACCTTCTA 6185 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || | || |||||||| || || || || || ||||||||||||||| Sbjct 6186 CTTCTAAAGTAATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCATT 6235 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||||||| | | |||||||| | ||| ||||||||||| ||||| |||| Sbjct 5096 CCACCTCTTAATCTGAGTACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAA 5155 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| ||||| || ||||| ||||| ||||| || || || || | ||| Sbjct 5156 AGAGTACGACCGTCTTCTAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGA 5215 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || ||| | ||| | || || || | || | | |||| || ||| || Sbjct 5216 ATAC-CTTCTTTATCTTGAATCTTGGTCTTTACATTCTCGATATTGTCACTACCTTCAAC 5274 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||| || || || || || || |||||||||||||| Sbjct 5275 TTCAAGAGTAATGGTCTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 5322 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | | ||||| || | ||| ||||||||||| |||||||||| Sbjct 5323 ACCACCTCTTAATCTGAGTACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 5382 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || | || ||||||||||| || | || || ||||| | ||| Sbjct 5383 AAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGG 5442 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || |||| | ||| | || | ||| | || | | | ||||| ||| | Sbjct 5443 AATACCTTCTTTGT-CTTGAATCTTGGTTTTTACATTCTCAATGTTATCGCTACCTTCAA 5501 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||| || || || || || || || || |||||||| Sbjct 5502 CTTCCAAGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 5550 >seq64 Length=175976 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | || || ||||| | || || ||||||||||| ||||| | Sbjct 77771 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGA 77830 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| || |||||||| || || || || || ||||| | ||| Sbjct 77831 GAGAGTACGACCATCCTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGG 77890 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||| || | | ||| | |||| ||||| | | | |||| ||| | Sbjct 77891 GATACCCTCTTTAT-CTTGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCTA 77949 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| || |||||||| || || | || |||||||| |||||||| Sbjct 77950 CTTCGAGGGTAATGGTTTTACCGGTCAAGGTTTTTACAAAAATTTGCAT 77998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543206030210480