Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq57 125 7e-24 >seq57 Length=183543 Score = 125 bits (138), Expect = 7e-24 Identities = 315/474 (66%), Gaps = 11/474 (2%) Strand=Plus/Minus Query 93887 CCATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTT 93946 ||||| | || || ||| ||||||| || || || || ||||||||||| |||| Sbjct 135902 CCATG-CTACTCCAACCTTGTTCAATGCAGGTACACCATCACCACAGATGTCAAGTTGTT 135844 Query 93947 TCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTG 94006 || || | | |||| ||||| || || || | ||| | | | || | |||| Sbjct 135843 TCTTGGTTCAAATGAAGGAGGACTCAATAGATGGTATCTACGATACCTTAAAACAATGTG 135784 Query 94007 CGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGG 94066 | ||||||||| || || || || || || |||||| | | |||||| Sbjct 135783 CATTAATCTCAAAAAGTGCTGGTGGTATTGGTATTGCCGTCCACAAGATTCGTGCC---- 135728 Query 94067 GTTCC----TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGG 94122 | || || || || ||||||||||| || |||||| | || || ||||| || Sbjct 135727 GCTCAAAGTTATATTCGTGGTACCAATGGTACTAGCAACGGTTTGGTACCAATGCTTCGT 135668 Query 94123 GTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTC 94182 || ||||| | | || || || || ||||| |||||||| | ||| || ||| | || Sbjct 135667 GTTTTCAATGATACTGCACGTTATGTTGACCAAGGTGGTGGTAAGAGAAAAGGTGCCTTT 135608 Query 94183 GCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAAC 94242 || ||||| | ||||| ||||| || || || | || || || || | | | || Sbjct 135607 GCCGTCTACTTAGAGCCATGGCATGCCGATGTATTTGAGTTTATTGATCT-CAAGAAAAA 135549 Query 94243 CAC-GGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCT 94301 ||| || || || | ||| || |||||||||||||||||||||||||| || | Sbjct 135548 CACTGGTAAAGAAGAGATGAGAGCAAGAGACCTCTTCTACGCTCTCTGGGTCAGTGATAT 135489 Query 94302 TTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGA 94355 |||||| |||| || || |||| | ||| || |||||||| ||||| Sbjct 135488 CTTTATGGAACGTGTTGAACAAAATGGTGATTGGGCACTCTTTTGTCCAAATGA 135435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494717034512120