Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq64 113 4e-20 seq224 93.3 4e-14 seq62 89.7 5e-13 >seq64 Length=175976 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || ||||| | || || |||||||||||||| ||||| Sbjct 78000 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGAG 78059 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| |||||| | || |||| || ||||| || || Sbjct 78060 AGAGTACGACCATCCTCTAATTGTTTGCCAGCGAAAATTAATCTTTGTTGATCTGGTGGG 78119 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| || || |||||| || | | ||| | | | || | || || ||| Sbjct 78120 ATACCCTCTTTATCTTGGATTTTGGCTTTTACATTTTCAATGTTATCAGAACCTTCTACT 78179 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||||| ||||||| |||||||||||||| ||||| Sbjct 78180 TCGAGTGTGATTGTTTTACCGGTCAAGGTTTTTACAAAAATTTGCAT 78226 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || ||||| | || || |||||||||||||| ||||| Sbjct 77772 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGAG 77831 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| ||||| | || | || || || || || || Sbjct 77832 AGAGTACGACCATCCTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGG 77891 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| || | | ||| | | ||| |||| | ||| | | |||| | || || || Sbjct 77892 ATACCCTCTTTAT-CTTGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCTAC 77950 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| ||| | ||||| ||||||| |||||||||||||| ||||| Sbjct 77951 TTCGAGGGTAATGGTTTTACCGGTCAAGGTTTTTACAAAAATTTGCAT 77998 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||||||||| ||||| | || ||| ||| |||| ||||| ||| Sbjct 77574 GTTGATTCTTTTTGAATATTATAATCTGAGAGAGTACGACCATCTTCTAATTGTTTACCA 77633 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || |||| || ||||| || || || ||||| || || |||||| || Sbjct 77634 GCGAAAATTAATCTTTGTTGATCTGGTGGGATACCCTCTTTATCTTGGATTTTGGCTTTT 77693 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | | | || | || ||| ||||||| || | ||||| ||||| | |||| Sbjct 77694 ACATTTTCAATGTTATCAGAACCCTCTACTTCGAGTGTGATTGTTTTACCGGTTAAAGTT 77753 Query 127097 TTTACAAAAATCTGCAT 127113 ||||||||||| ||||| Sbjct 77754 TTTACAAAAATTTGCAT 77770 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || ||||| | || || |||||||||||||| ||||| Sbjct 78228 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGAG 78287 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| ||||| | || | || || || || || || Sbjct 78288 AGAGTACGACCATCCTCTAATTGTTTGCCAGCAAAAATAAGACGTTGTTGGTCTGGTGGG 78347 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || | | ||| | | ||| |||| | ||| | | |||| | || || || Sbjct 78348 ATACCTTCTTTAT-CTTGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCTAC 78406 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | ||||| || || |||||||| || ||||| ||||| Sbjct 78407 TTCGAGAGTAATGGTTTTACCTGTGAGAGTTTTAACGAAAATTTGCAT 78454 >seq224 Length=37943 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| ||| || || || | || || |||||||||||||||||||| Sbjct 19035 CCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19094 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || |||| ||||| |||||| | || |||| || || || || || Sbjct 19095 AGAGTACGACCGTCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGG 19154 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || |||| | ||| ||| ||| |||| | ||| | | | || ||| || || Sbjct 19155 ATACCTTCTTTGT-CTTGAATTTTTGCTTTGACATTTTCAATGTTATCGCTACCTTCAAC 19213 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || | ||||| ||||| || ||||| Sbjct 19214 TTCTAATGTGATTGTTTTACCAGTTAAGGTTTTGACAAAGATTTGCAT 19261 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || || || | || || |||||||||||||||||||| Sbjct 19491 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19550 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| || ||| | || | || || ||||| || || Sbjct 19551 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGG 19610 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| |||||| || | | ||| | | | || ||| || || Sbjct 19611 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGTTATCACTACCTTCAACC 19670 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||||| |||||| |||||||| ||||| Sbjct 19671 TCAAGAGTAATGGTCTTACCGGTCAAAGTTTTAACAAAAATTTGCAT 19717 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || || || | || || |||||||||||||||||||| Sbjct 19947 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 20006 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || |||| ||||| || || | || | || || ||||| || || Sbjct 20007 AGAGTACGACCGTCTTCTAATTGTTTACCGGCAAAAATAAGACGTTGTTGATCTGGTGGA 20066 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| |||||| || | | ||| | | | || | || || ||| Sbjct 20067 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGTTATCAGAACCTTCAACT 20126 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTTATT 127125 || | ||| | ||||| || || | ||||| |||||||| ||||| ||| |||| || Sbjct 20127 TCTAAGGTAATAGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATTGCTAATTTTTT 20185 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || || || | || || |||||||||||||||||||| Sbjct 19263 CCACCTCTTAATCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 19322 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || |||| ||||| || ||| | || | || || ||||| || || Sbjct 19323 AGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGG 19382 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| |||||| ||| | | ||| | | | || ||| || ||| Sbjct 19383 ATACCTTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATGTTATCACTACCTTCAACT 19442 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || | ||||||||||| || ||||| Sbjct 19443 TCTAAAGTGATGGTTTTACCAGTTAAGGTTTTTACAAAGATTTGCAT 19489 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| ||| || || || | || || |||||||||||||||||||| Sbjct 19719 CCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAG 19778 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| ||||| | || |||| || || || || || Sbjct 19779 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGG 19838 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| || || ||| | | ||| | | | || | || || ||| Sbjct 19839 ATACCTTCTTTGTCTTGAATCTTGGCCTTAACATTTTCAATGTTATCTGAACCTTCAACT 19898 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || | ||||||||||| || ||||| Sbjct 19899 TCTAATGTGATGGTTTTACCAGTTAAGGTTTTTACAAAGATTTGCAT 19945 >seq62 Length=176758 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | || ||||| | || || ||||||||||| ||||| || Sbjct 76809 CCACCTCTTAATCTAAGAACTAAATGGAGGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 76750 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| || ||| | || | || || ||||| || || Sbjct 76749 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 76690 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| || ||||| |||||| || | | |||| | | || | || || ||| Sbjct 76689 ATGCCTTCTTTGTCTTGGATTTTGGCTTTAACATTCTCGATGTTATCAGAACCTTCAACT 76630 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || |||||||| |||||||| ||||| Sbjct 76629 TCCAATGTGATTGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 76583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494874071280