Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq57 219 5e-52 seq24 82.4 9e-11 >seq57 Length=183543 Score = 219 bits (242), Expect = 5e-52 Identities = 1138/1779 (64%), Gaps = 70/1779 (4%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || || |||||||| || ||||| | |||| |||||| | || | ||||||||| | Sbjct 134250 CGAAGATAGTACATACCAGTCTTTAAACCCTTCTTCCAAGAGTAGAAATGCATTGAAGTG 134309 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | || | | ||||| | ||||| | || | |||||| |||||||||||| Sbjct 134310 AGTTTTGCAAAGGTTGGTTCAGCGATGAAAACATTGAAACTTTGACTTTGATCGATGAAA 134369 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCACACAGTTCT 115736 || ||||| || ||||||||||| | | | ||| | |||||||| || ||| | Sbjct 134370 GCACCACGATCAGCAGCCATATCAATGAGAGTTCTTTGACGA-ATTTCCCATACGGTTTT 134428 Query 115737 GTAGAGGTTCTT--AATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 |||||| ||||| ||| |||||||| ||| | | || |||||| || |||| ||| Sbjct 134429 GTAGAG-TTCTTTCAAT-TCATCTGGAATACCACCAATCGATTGGATTGAACCACGTGCA 134486 Query 115795 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 || || ||| |||||| || || ||| | || | || | |||||||||||| Sbjct 134487 GCGATGATTTGATTCTTCATCTCTGGTGTCCAAATGCCCAACTCCATGAGATCCTCCAAC 134546 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 | || || ||||||| || ||||| || | | || | || ||||| | Sbjct 134547 AATTGTTTGTTGACAATTGTGAATTCACCAGCCAAGACACGACGACTGTAAATGTTTGAA 134606 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 |||||||| |||||||| ||||| ||||| | |||||| || || || || ||||| Sbjct 134607 GTGTATGGTTCAAAGCATTCATTATTACCAAGGATTTGACTAGTTGAAGCGGTTGGCATT 134666 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATG-CG-----TTCCTTGAGG 116028 ||||| || | || || || |||| | || || || || ||||| | Sbjct 134667 GGTGCGATCAATAGTGAATTACGTAGAC---CACCTTTATTGACGATCTTATCCTTTAAT 134723 Query 116029 GCGTCCC-AGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACC 116087 |||||| | || | ||| ||| || | | | |||||||||||| ||||| ||||| Sbjct 134724 TCGTCCCAATTCCAACGTGAACTTGGTGT-AACATTCCACATATCAAATTGGAGAATACC 134782 Query 116088 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC-GG 116146 || ||| ||||| || || | || ||||||||| ||| ||| | || ||||| | Sbjct 134783 TTTGGATGCTGGGGAACCTTGGAAACTCTCATATGTGCCATCACGTACTGCTAATTCATG 134842 Query 116147 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGG 116206 || || | || ||| ||| || || ||| || | |||||| | | Sbjct 134843 AG-AAGCTGTTAAAGCGGCGAAATAAATGGTTTCAGCGATTTCAACATTCAATTTAGATG 134901 Query 116207 CCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACAC 116266 | | | ||| || | | ||| ||| || ||||| || | |||||| | || Sbjct 134902 CAGCAACACTATCGAATGGCATACGCATTTGAATGAAAACATCGGCCAAACCTTGAATAC 134961 Query 116267 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT-CCACGGGATAAAAA 116325 | | || ||||| |||||||| | ||| || || || ||| | || |||||||| Sbjct 134962 CAATACCGATTGGACGATGTCTGAGATTCGAAGTTTTTGC-CTCTACAACAGGATAAAAG 135020 Query 116326 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC----ATGAA- 116380 || | |||||||| || |||||| |||| | ||| || || || | ||| Sbjct 135021 TTACGATCGATAATAACGTTGAGATTTACAGTGATCAACTTGGTTATCTCAAAGAGGAAT 135080 Query 116381 -GCTTTTCGTAATC----------AAAACTG-CGAGTCTCTTCATTGAC--AT--ACTTA 116424 | | ||| | || | ||| ||| || | ||||| || | || Sbjct 135081 TGATGATCGAATTCCTTCTCTTTTGGATCTGTGGAGCCTGGTTTTTGACGAATGAATTTT 135140 Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC--CTTATCAGTGTACTCTA 116482 ||||| || || || || |||||||| |||| | ||||| | || ||||| | | Sbjct 135141 GGAAGTGCAATAGAGGCAAGATTACATACAGCAATTTCATCAGGTGAT--GTGTATTGAA 135198 Query 116483 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 116542 | || || ||||| | ||| || | ||||| || | ||||||||||| || || | Sbjct 135199 TGATCTCAGTACAAAGATTACTGCTACTGATGGTACCGAGATTCTTTTGATTGGATTTAG 135258 Query 116543 TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 116602 || || |||||||| || | || |||| || || || || ||| |||| | || Sbjct 135259 CATTGCAAGCATCCTTATACAATATGAATGGTGTACCAGTTTCAACTTGTGACTCCATAA 135318 Query 116603 TAGCCTTCCATACATC-GGCGGCT--GGCACA-GTGGCGTTGGCTC-GCCCCTCCTCCTC 116657 | || ||| | || | | || ||| || | | || | | || || Sbjct 135319 TTGCAAACCAAAGTTCTTGTGCCTTAATTACACGTCTTGGAAGATCTGGTGTTGCT--TC 135376 Query 116658 GTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTT 116717 || ||| ||||||||| | ||| ||| || ||| ||||| |||||||||| Sbjct 135377 ATATTTTAAGTAGAGGGCACGATGCTCCTCAGAGTGAGTCTCAGAGAGACCTGGTGCCTC 135436 Query 116718 ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGG 116777 || |||||| ||||| | ||| | |||| | ||||| || | ||| |||| || Sbjct 135437 ATTTGGACAAAAGAGTGCCCAATCACCATTTTGTTCAACACGTTCCATAAAGATATCACT 135496 Query 116778 GATCCAGAGCGCCGAGAAGAGATC-----CCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832 || |||||| || ||||||| || | || | |||||| | || || || Sbjct 135497 GACCCAGAGAGCGTAGAAGAGGTCTCTTGCTCTCATC--TCTTCTT--TACCAGTGTTTT 135552 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892 | | || | ||| || | | ||| || ||||| || || | ||| || || | Sbjct 135553 TCTTG-AGATCAATAAACTCAAATACATCGGCATGCCATGGCTCTAAGTAGACGGCAAAG 135611 Query 116893 GACCCCTTGC---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 | || || | || |||| | |||| ||||| | || || | || || || ||| Sbjct 135612 GCACCTTTTCTCTTACCACCACCTTGGTCAACATAACGTGCAGTATCATTGAAAACACGA 135671 Query 116950 AGCATTGGAATGATACCATCAGATTG-GCCATTTGTCCCCCGAATACGAGACTTGTTGGC 117008 |||||||| | | ||| | | | | ||||| || || |||||| | | ||| Sbjct 135672 AGCATTGGTACCAAACCGT-TGCTAGTACCATTGGTACCACGAATATAACTTTGAGCGGC 135730 Query 117009 TCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTC 117068 | | | ||||| | ||||||||||| || || | ||||||||| ||| || | Sbjct 135731 ACGAATCTTGTGGACGGCAATACCAATACCACCAGCACTTTTTGAGATTAATGCACATTG 135790 Query 117069 CGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGC 117127 | | | ||||||| ||||| || ||||| |||| ||||| | | ||| || | Sbjct 135791 TTTTAAGGTATCGTAGATACCATCTATTGAGTCCTCCTTCATTTG-AACCAAGAAACAAC 135849 Query 117128 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 117187 | ||||| ||||| ||||||||| || ||||| | |||||| || || ||| |||||| Sbjct 135850 TTGACATCTGTGGTGATGGTGTACCTGCATTGAACAAGGTTGGAGTAGCATGGGTGAACA 135909 Query 117188 TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATAC 117247 || || | | | |||||| | | | || |||||||| || || |||| Sbjct 135910 ATTTCTGAGAGAGATGTTTGTAGGTGTTAATGGCACTATCGATGTCTTCACCATGGATAC 135969 Query 117248 CGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 117286 | | ||||| ||||| ||||| | ||| || ||||| Sbjct 135970 CTACAGAGACACGCATCAACATATGTTGTGGACGTTCCA 136008 >seq24 Length=311718 Score = 82.4 bits (90), Expect = 9e-11 Identities = 195/288 (68%), Gaps = 19/288 (7%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCG---C 12847 ||| |||||||| ||| ||| |||||||| | || | ||||| |||||||||| | Sbjct 86575 GAAACCATCCATTTCAACCAAAAGTTGATTTAATGTATTCTCACGCTCATCATTCGAACC 86634 Query 12848 GGGCATACCACCCGCACTGCGTTGCT-TACCGACGGCGTCAATTTCGTCAATGAAAACGA 12906 | | |||||| || | ||||| |||||| || ||||| || || |||||||| | Sbjct 86635 AGAGAAACCACCTTTACCTC-TTGCTCTACCGATTGCATCAATCTCATCTATGAAAACAA 86693 Query 12907 TACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTC-TCTTGGCACCGACA 12965 | || ||| || | | || |||||| | |||| || | | ||| ||| ||| Sbjct 86694 TGCAAGGTGCGTTCTTTCTTGCTTGTTCAAATAATTCTCTAACACGTGATGG-ACCAACA 86752 Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGAA-CATTGG-----ATGAAGGGGACGTTG 13019 || ||||||||||| || |||| | ||| || ||| | ||| || || || Sbjct 86753 CCAACAAACATCTCTACGAAAT------CTGAACCACTGGTTGAAAAGAATGGTACATTT 86806 Query 13020 GATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 |||||||| ||| | ||| ||| | | || || || || |||||| Sbjct 86807 GATTCACCTGCGGTTGCTTTGGCAATCAATGTTTTACCGGTACCTGGT 86854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499554166520