Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq175 118 2e-21 seq62 113 1e-19 seq224 86.0 1e-11 >seq175 Length=69793 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | |||||||| || |||||||| | ||||||||||| | ||| | || Sbjct 5107 TCTGAGTACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGACC 5166 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| || || || |||||||| |||||||| || || || || ||| |||||| Sbjct 5167 GTCTTCTAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTT 5226 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || |||||||| ||| || |||| |||| | ||| || || | || || Sbjct 5227 ATCTTGAATCTTGGTCTTTACATTCTCGATATTGTCACTACCTTCAACTTCAAGAGTAAT 5286 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| ||||||||||| ||||| ||||| Sbjct 5287 GGTCTTACCAGTGAGAGTTTTAACAAAGATTTG 5319 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | |||||||| ||||||||||| | |||||| |||| | ||| | || Sbjct 6019 TCTGAGTACCAAATGGAGAGTGGACTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACC 6078 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || || || ||||| || ||||| || ||||| || ||| ||||| Sbjct 6079 ATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTT 6138 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| || || || ||| | |||| | |||||| || || || || Sbjct 6139 GTCTTGAATTTTGGTTTTTACATTTTCAATATTGTCAGAACCTTCTACTTCTAAAGTAAT 6198 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||||||||| ||||| ||||| Sbjct 6199 GGTTTTACCAGTGAGAGTTTTAACAAAGATTTG 6231 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | || ||||| || |||||||||| || || || | || || | || Sbjct 5791 TCTGAGTACCAAATGAAGAGTTGATTCCTTTTGGATATTATAATCGGATAATGTACGGCC 5850 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| |||| || || || ||||| || ||||| || ||||| || ||| |||||| Sbjct 5851 ATCCTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTT 5910 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || |||||||| ||| || |||| | |||| | ||| || || | || || Sbjct 5911 ATCTTGAATCTTGGTCTTTACATTCTCGATGTTGTCACTACCTTCAACTTCAAGAGTAAT 5970 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| ||||||||||| ||||| ||||| Sbjct 5971 GGTCTTACCAGTGAGAGTTTTAACAAAGATTTG 6003 >seq62 Length=176758 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||| || || | |||||||| ||||| ||||| | |||||| |||| | ||| Sbjct 77031 CGAAGTCTAAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTGTAATCAGAGAGAGTA 76972 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| | || || |||||||| || ||||| || || || || ||| ||| Sbjct 76971 CGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCT 76912 Query 199529 TCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || ||| |||| || |||| | | || | ||| || || || Sbjct 76911 TCTTTGTCTTGGAT-TTTGGCTTTGACATTCTCGATGTTATCGGAACCTTCAACTTCTAA 76853 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| ||||| ||||| ||||||||||| Sbjct 76852 TGTGATGGTCTTACCAGTGAGGGTTTTAACAAAAATTTG 76814 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||||| || || || ||||| | ||||||||||| | ||| | || Sbjct 76798 TCTAAGAACTAAATGGAGGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTACGACC 76739 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || |||||||| || ||||| || || || || ||| |||||| Sbjct 76738 ATCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATGCCTTCTTT 76679 Query 199534 CTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || || || ||| || || || |||| | | || | ||| || ||||| |||| Sbjct 76678 GTCTTGGAT-TTTGGCTTTAACATTCTCGATGTTATCAGAACCTTCAACTTCCAATGTGA 76620 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || ||||| ||||||||||| ||||||||||| Sbjct 76619 TTGTTTTACCAGTGAGAGTTTTAACAAAAATTTG 76586 Score = 100 bits (110), Expect = 7e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | ||||||||| || || ||||||| ||||||||||| | ||| | || Sbjct 77710 TCTAAGGACTAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACC 77651 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| | || || |||||||| || ||||| || || || || ||| |||||| Sbjct 77650 GTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTT 77591 Query 199534 CTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || || || ||| || || || || | |||| | ||| || || | || | Sbjct 77590 GTCTTGGAT-TTTGGCTTTGACATTCTCAATATTGTCACTACCTTCAACCTCGAGAGTAA 77532 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || ||||| ||||| ||||| ||||||||||| Sbjct 77531 TGGTTTTACCAGTGAGGGTTTTAACAAAAATTTG 77498 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||| || || | |||||||| ||||| ||||| | ||| || |||| | ||| Sbjct 77487 CGAAGTCTAAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAATCAGAGAGAGTA 77428 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| | || || ||||| ||||| | | || || || || ||| ||| Sbjct 77427 CGACCGTCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATACCT 77368 Query 199529 TCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || ||| |||| || |||| | | || | ||| || || || Sbjct 77367 TCTTTGTCTTGGAT-TTTGGCTTTGACATTCTCGATGTTATCGGAACCTTCAACTTCTAA 77309 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| ||||| ||||| ||||||||||| Sbjct 77308 TGTGATGGTCTTACCAGTGAGGGTTTTAACAAAAATTTG 77270 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||||| || || || ||||||| ||||||||||| | ||| | || Sbjct 77254 TCTAAGAACTAAATGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACC 77195 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| | || || |||||||| || ||||| || || || || ||| |||||| Sbjct 77194 GTCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTT 77135 Query 199534 CTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || || || ||| || || || || | | |||| | ||| || || | || | Sbjct 77134 GTCTTGGAT-TTTGGCTTTAACATTCTCAATGTTGTCACTACCTTCGACTTCGAGAGTAA 77076 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || ||||| ||||| ||||| ||||||||||| Sbjct 77075 TGGTTTTACCAGTGAGGGTTTTAACAAAAATTTG 77042 >seq224 Length=37943 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| | ||| | ||||||||| || || ||||| | ||||| |||| | ||| | || Sbjct 19502 TCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGACC 19561 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || |||||||| || ||||| || || || || || |||||| Sbjct 19562 ATCTTCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCTTT 19621 Query 199534 CTCCTGAATCTTTTGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || || || ||| |||| | | ||| | | | || | ||| || || | || | Sbjct 19622 GTCTTGGAT-TTTGGCTTTAACATTTTCAATGTTATCACTACCTTCAACCTCAAGAGTAA 19680 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | |||||||| || | |||||| ||||||||||| Sbjct 19681 TGGTCTTACCGGTCAAAGTTTTAACAAAAATTTG 19714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178906540381799