Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq73 114 9e-21 seq6 95.1 8e-15 seq62 89.7 4e-13 seq175 87.8 1e-12 seq224 86.0 4e-12 seq64 84.2 2e-11 >seq73 Length=158548 Score = 114 bits (126), Expect = 9e-21 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 42511 TATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATG 42570 ||| |||||||||||||| | ||| || | ||||||| ||||| ||||||||||| | Sbjct 10243 TATATTACCTAAATCACCTACATGACGATTCTCATCATTTGGTCCACCGTGTTCTTTTTT 10302 Query 42571 AAAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATG 42630 ||| |||||| | || | || || ||| ||||||||||||| ||||| ||||| || || Sbjct 10303 AAATGGATTATAGTGAGCTCCTGCTGATATACATCCATTGGTTGTATCACCAAACTCGTG 10362 Query 42631 TATATGAAAACCGTGATAACC 42651 | |||||| || || | ||| Sbjct 10363 AACATGAAATCCATGTTTACC 10383 >seq6 Length=461532 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| ||||| || |||||||||| ||| || |||| || |||||||| ||| |||| Sbjct 390628 TTCCTTTTGGATGTTATAATCGGATAAAGTACGACCATCTTCTAATTGTTTACCGGCAAA 390687 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | ||| || ||||| | || | ||||||||||| || || ||| | | Sbjct 390688 GATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGAATCTTGGCTTTGACGTT 390747 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | |||||| | ||| || || | ||| || |||||||| ||||| ||||| || Sbjct 390748 TTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAAC 390807 Query 39708 GAAGATCTGCAT 39719 |||||| ||||| Sbjct 390808 GAAGATTTGCAT 390819 >seq62 Length=176758 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || ||||| | ||| ||||||||| || || || || | | | || |||| Sbjct 76794 AGAACTAAATGGAGGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTACGACCATCT 76735 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || |||||||| ||| | ||||| | ||| || ||||| | || | |||||||||||| Sbjct 76734 TCTAATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATGCCTTCTTTGTCT 76675 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||||| || | | | || | | ||| || ||||| || |||||| Sbjct 76674 TGGATTTTGGCTTTAACATTCTCGATGTTATCAGAACCTTCAACTTCCAATGTGATTGTT 76615 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | |||||| || || || ||||| Sbjct 76614 TTACCAGTGAGAGTTTTAACAAAAATTTGCAT 76583 >seq175 Length=69793 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 ||||||||||| | ||| ||| ||||| ||||||||||||| || || |||| Sbjct 5795 AGTACCAAATGAAGAGTTGATTCCTTTTGGATATTATAATCGGATAATGTACGGCCATCC 5854 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC- 39626 ||||||||||| || | ||||| | ||| || || || | || | |||||||| || Sbjct 5855 TCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCT 5914 Query 39627 -GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 | || || | || || ||| | ||| || | ||| || || | |||||| | Sbjct 5915 TGAATCTTGGTCTTTACATTCTCGATGTTGTCACT--ACCTTCAACTTCAAGAGTAATGG 5972 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || | |||||| || ||||| ||||| Sbjct 5973 TCTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 6006 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 ||||||||||| | |||| || ||||| || || ||||| | | | || |||| Sbjct 6023 AGTACCAAATGGAGAGTGGACTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCT 6082 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC- 39626 ||||||||||| || | ||||| | ||| || || || | || | ||||| ||||| Sbjct 6083 TCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCT 6142 Query 39627 -GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 | || || || || || || || |||| | | ||| || || |||||||| | Sbjct 6143 TGAATTTTGGTTTTTACATTTTCAATA--TTGTCAGAACCTTCTACTTCTAAAGTAATGG 6200 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||| || | |||||| || ||||| ||||| Sbjct 6201 TTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 6234 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || || ||||| | |||| ||||||||| || || ||||||| Sbjct 5552 CCACCTCTCAATCTAAGAACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAATCGGAT 5611 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| ||||||||||| || | ||||| || | || || || | || Sbjct 5612 AATGTACGACCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGG 5671 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| |||||| ||| | | | | | |||| || || || Sbjct 5672 ATACCTTCTTTGTCTTGAATTTTTGTTTTCACATTTTCAATATTATCTGAGCCCTCAACT 5731 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || || ||||| ||||| || || || ||||| ||||| Sbjct 5732 TCGAGAGTGATGGTCTTACCAGTTAATGTCTTAACAAAGATTTGCAT 5778 >seq224 Length=37943 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||||||||| ||||| ||||| | | | || | || || |||||||| ||| |||| Sbjct 19982 TTCTTTTTGAATATTGTAATCAGAAAGAGTACGACCGTCTTCTAATTGTTTACCGGCAAA 20041 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 ||| | ||| || ||||| | || | ||||||||||| ||||| ||||| | Sbjct 20042 AATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTGGCTTTAACATT 20101 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | || | | ||| || || || ||||| |||||||| ||||| ||||| || Sbjct 20102 TTCAATGTTATCAGAACCTTCAACTTCTAAGGTAATAGTTTTACCAGTTAATGTTTTAAC 20161 Query 39708 GAAGATCTGCAT 39719 || || ||||| Sbjct 20162 AAAAATTTGCAT 20173 >seq64 Length=175976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||| | ||| ||||||||| ||||||||||| | | | || |||| || Sbjct 78246 ACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCT 78305 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || ||||||| | ||| || || || | || | |||||||| || Sbjct 78306 AATTGTTTGCCAGCAAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCTTTATCTTGA 78365 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || ||| ||| | | | | |||| | | ||| || || | |||||| |||||| Sbjct 78366 ATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCTACTTCGAGAGTAATGGTTTTA 78425 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | |||||| ||||| || ||||| Sbjct 78426 CCTGTGAGAGTTTTAACGAAAATTTGCAT 78454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347365379133701