Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq62 131 2e-25 seq175 102 8e-17 seq224 86.0 6e-12 seq6 86.0 6e-12 >seq62 Length=176758 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || |||||||| || |||| ||||| | | Sbjct 77039 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACTCTCGAAGTCGAAGGTAGT 77098 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||||| ||||||| |||||||| || ||||| | || ||| Sbjct 77099 GACAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 77158 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| ||| || ||||| | || |||| || || ||| ||||||||| Sbjct 77159 CAACGTCTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCTCTCTGACTACAAC 77218 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| | || || ||||| || || | || ||||| || Sbjct 77219 ATCCAAAAAGAATCAACCCTCCATTTAGTTCTTAGATTAAGAGGTGG 77265 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || |||||||| || |||| || || | | Sbjct 77495 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACTCTCGAGGTTGAAGGTAGT 77554 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||||||| |||||||| || ||||| | || ||| Sbjct 77555 GACAATATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 77614 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| ||| || ||||| | || |||| || || ||| ||||||||| Sbjct 77615 CAACGTCTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCTCTCTGACTACAAC 77674 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||| | || || || || || || | || ||||| ||| Sbjct 77675 ATCCAAAAAGAATCCACTCTCCACTTAGTCCTTAGATTAAGAGGTGGC 77722 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || ||||| ||||| | || || || | | Sbjct 76583 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACAATCACATTGGAAGTTGAAGGTTCT 76642 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||||| ||||||| |||||||| || ||||| | || ||| Sbjct 76643 GATAACATCGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGATCAA 76702 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| ||| || ||||| | || || | || || || ||||||||| Sbjct 76703 CAACGTCTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGACTACAAC 76762 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || ||||| || || | || ||||| || Sbjct 76763 ATTCAAAAAGAATCCACCCTCCATTTAGTTCTTAGATTAAGAGGTGG 76809 >seq175 Length=69793 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || || ||||| || | || || || | | Sbjct 5322 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAGACCATTACTCTTGAAGTTGAAGGTAGT 5263 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | || | |||||| || || | || ||||| || ||||| | || | Sbjct 5262 GACAATATCGAGAATG--TAAAGACCAAGATTCAAGATAAAGAAGGTATTCCACCAGATC 5205 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || ||||||| ||| || ||||| || || |||| || || || ||||||| Sbjct 5204 AACAACGTCTCATTTTCGCCGGTAAACAACTAGAAGACGGTCGTACTCTTTCTGACTACA 5145 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||||||| | || || |||||||| || | || ||||| || Sbjct 5144 ACATTCAAAAGGAATCCACTCTCCATTTGGTACTCAGATTAAGAGGTGG 5096 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || || ||||| || | || || || | | Sbjct 6006 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAGACCATTACTCTTGAAGTTGAAGGTAGT 5947 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | |||||| || || | || ||||| || ||||| | |||| Sbjct 5946 GACAACATCGAGAATG--TAAAGACCAAGATTCAAGATAAAGAAGGTATTCCACCAGACC 5889 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || || |||| ||| || ||||| |||| || | || || | ||| || | Sbjct 5888 AACAACGTCTTATTTTCGCTGGTAAACAATTGGAGGATGGCCGTACATTATCCGATTATA 5829 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | |||||||||||| | || || |||||||| || | || ||||| || Sbjct 5828 ATATCCAAAAGGAATCAACTCTTCATTTGGTACTCAGATTAAGAGGTGG 5780 >seq224 Length=37943 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| | || || ||||||||||| | || || || | | Sbjct 19489 ATGCAAATCTTTGTAAAAACCTTAACTGGTAAAACCATCACTTTAGAAGTTGAAGGTAGT 19430 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| |||| | ||||||| |||||||| || || || | || ||| Sbjct 19429 GATAACATTGAAAATGTTAAGGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 19370 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| ||| || ||||| | || |||| || || || || ||||| Sbjct 19369 CAACGTCTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACAAT 19310 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || || || || | | || ||||| || Sbjct 19309 ATTCAAAAAGAATCAACTCTCCACTTAGTCTTAAGATTAAGAGGTGG 19263 >seq6 Length=461532 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| ||||| | || || ||||||||||| |||| || || | Sbjct 390822 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 390763 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | ||||| | |||| || || | |||||||| || || || | || Sbjct 390762 TCAGACAACATCGAAAACG-TCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGA 390704 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| || || || | || || ||||| | || || | || || | ||| || Sbjct 390703 TCAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTA 390644 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||| | || || || || || | | || ||||| || Sbjct 390643 TAACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 390593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166566596480