Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq57 163 3e-35 seq24 93.3 5e-14 >seq57 Length=183543 Score = 163 bits (180), Expect = 3e-35 Identities = 689/1077 (64%), Gaps = 46/1077 (4%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 |||||||| |||||||| || || | ||| |||||| | ||| | ||||||||||| | Sbjct 134250 CGAAGATAGTACATACCAGTCTTTAAACCCTTCTTCCAAGAGTAGAAATGCATTGAAGTG 134309 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACT--GATCGATGA 109525 ||||| | || || || | || || | || | ||| |||| ||||||||| Sbjct 134310 AGTTTTGCAAAGGTTGGTTCAGCGATGAAAACATTGAA--ACTTTGACTTTGATCGATGA 134367 Query 109526 ATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCT 109585 | |||||||||||| ||||| || |||| | |||| | ||||||||| || || | Sbjct 134368 AAGCACCACGATCAGCAGCCATATCAATGAGAGTTCTTTGACGAATTTCCCATACGGTTT 134427 Query 109586 TGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCT 109645 |||| | | || | ||||| ||||| | | || ||| || || |||| || Sbjct 134428 TGTAGAGTTCTTTCAATTCATCTGGAATACCACCAATCGATTGGATTGAACCACGTGCAG 134487 Query 109646 TCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC-AACA 109704 | || ||| |||||||||| | ||| | || | || ||||||| || |||| Sbjct 134488 CGATGATTTGATTCTTCATCTCTGGTGTCCAAATGCCCAACTCCATGAGATCCTCCAACA 134547 Query 109705 AGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTC 109764 | || |||||||| | ||||||||||| | || || ||| ||||| | Sbjct 134548 AT-TGTTTGTTGACAATTGTGAATTCACCAGCCAAGACACGACGACTGTAAATGTTTGAA 134606 Query 109765 GTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATG 109824 ||||| ||||| || || ||||| || || |||||||| ||| ||||| || ||||| Sbjct 134607 GTGTATGGTTCAAAGCATTCATTATTACCAAGGATTTGACTAGTTGAAGCGGTTGGCATT 134666 Query 109825 GGAGCCATGAGAAGACTGTTTCGGAGAC--CCTTCGTCTTTACCCGCTCACGC---ATTG 109879 || || || | || || || |||| |||| | || || || | | | | Sbjct 134667 GGTGCGATCAATAGTGAATTACGTAGACCACCTT--TATTGACGATCTTATCCTTTAATT 134724 Query 109880 CGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939 ||||||||| |||| | || || || | | ||| ||||||||| ||| || | Sbjct 134725 CGTCCCAATTCCAACG-----TGAACTTGGTGT-AACATTCCACATATCAAATTGGAGAA 134778 Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999 ||| | | || || ||||| | ||||||||| || | || ||| | || || | Sbjct 134779 TACCTTTGGATGCTGGGGAACCTTGGAAACTCTCATATGTGCCATCACGTACTGCTAATT 134838 Query 110000 CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCA--TGAG 110057 | ||||| || || || ||| || || ||| || | | |||||| | || Sbjct 134839 CATGAGAAGCTGTTAAAGCGGCGAAATAAATGGTTTCAGCGATTTCAACATTCAATTTAG 134898 Query 110058 GCG-AGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCT 110116 | || | ||| ||||| || | || |||| || ||||| || | ||| | Sbjct 134899 ATGCAG---CAACACTATCGAATGGCATACGCATTTGAATGAAAACATCGGCCAAACCTT 134955 Query 110117 GAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGT 110176 ||| ||| | ||| || || ||||| | | || || | || | | || || | Sbjct 134956 GAATACCAATACCGATTGGACGATGTCTGAGATTCGAAGTTTTTGCCTCTACAACAGGAT 135015 Query 110177 AAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGA 110236 ||||||| || ||||| | |||||||| || | ||| || || ||| || Sbjct 135016 AAAAGTTACGATCGATAATAACGTTGAGATTTACAGTGATCAACTTGGTTATCTCAAAGA 135075 Query 110237 GTTTGTCGTAATCGAA--CGTTTTC---------------GTCTCCTTATTGAC--AT-- 110275 | | | |||||| | || || | || || ||||| || Sbjct 135076 GGAATTGATGATCGAATTCCTTCTCTTTTGGATCTGTGGAGCCTGGTTTTTGACGAATGA 135135 Query 110276 ATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATT 110335 |||| || || |||||||| |||||||| || |||| | | || || ||||||| Sbjct 135136 ATTTTGGAAGTGCAATAGAGGCAAGATTACATACAGCAATTTCATCAGGTGATGTGTATT 135195 Query 110336 CCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATT 110395 | || || ||||| | || || | ||| ||| | ||||| ||||| |||| Sbjct 135196 GAATGATCTCAGTACAAAGATTACTGCTACTGATGGTACCGAGATTCTTTTGATTGGATT 135255 Query 110396 TGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACT 110452 | | ||||| ||||||||||| | ||| |||| ||||||||||| ||||||| Sbjct 135256 TAGCATTGCAAGCATCCTTATACAATATGAATGGTGTACCAGTTTCAACTTGTGACT 135312 >seq24 Length=311718 Score = 93.3 bits (102), Expect = 5e-14 Identities = 278/423 (66%), Gaps = 21/423 (5%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| | |||||| | |||||| | |||| || | ||| | |||||| | |||| Sbjct 86480 ATCTGTCTATCGAATCTACCTGGTCTAAGTAATGCTTTATCCAAGATATCGGGTCTGTTT 86539 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATTG--TCGAAACCGTCCATTTCTGTGAGAA 11614 || || || | ||| || | | | ||| || | |||||| |||||||| | || Sbjct 86540 GTGGCAGCCAAGACCACTACGTT--TTTCAATGGTTTGAAACCATCCATTTCAACCAAAA 86597 Query 11615 GCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG---GGCATACCACCTGCCGAACGCT 11671 | || || | || | ||||||||||| || || | | ||||||| | | || Sbjct 86598 GTTGATTTAATGTATTCTCACGCTCATCATTCGAACCAGAGAAACCACCTTT--ACCTCT 86655 Query 11672 T-CT-TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC 11729 | || |||||| || ||||||||||| ||||| || || || ||| ||| | ||| Sbjct 86656 TGCTCTACCGATTGCATCAATCTCATCTATGAAAACAATGCAAGGTGCGTTCTTTCTTGC 86715 Query 11730 CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789 ||||| || | ||| | ||||| | |||||||| || |||||||| ||||| | Sbjct 86716 TTGTTCAAATAATTCTCTAACACGTGATGGACCAACACCAACAAACATCTCTACGAAATC 86775 Query 11790 TGCGGCAGAACACTG-----AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCG 11844 || | ||||| || ||| || ||||| || ||||| ||| | ||| || Sbjct 86776 TG-----AACCACTGGTTGAAAAGAATGGTACATTTGATTCACCTGCGGTTGCTTTGGCA 86830 Query 11845 AGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCA 11904 | | || ||||| ||||| |||| ||| | | | || || | || ||||| || Sbjct 86831 ATCAATGTTTTACCGGTACCTGGTGGTCCAACCAAGATTGCACCTCTTGGAATCTTTGCT 86890 Query 11905 CCA 11907 ||| Sbjct 86891 CCA 86893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588968659886600