Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq57 260 2e-64 seq608 100 3e-16 seq24 100 3e-16 seq35 87.8 2e-12 >seq57 Length=183543 Score = 260 bits (288), Expect = 2e-64 Identities = 1171/1831 (64%), Gaps = 56/1831 (3%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 || ||||||||||| || ||||| | || | ||||| | ||| | |||||| |||| | Sbjct 134250 CGAAGATAGTACATACCAGTCTTTAAACCCTTCTTCCAAGAGTAGAAATGCATTGAAGTG 134309 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 || || | | ||||| | ||||||| ||| | ||||||||| || || ||||| Sbjct 134310 AGTTTTGCAAAGGTTGGTTCAGCGATGAAAACATTGAAACTTTGACTTTGATCGATGAAA 134369 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTGATTTCCCACACTGTGCG 105768 |||||| | || ||||||||||||| | | ||| | |||||||| || || Sbjct 134370 GCACCACGATCAGCAGCCATATCAATGAGAGTTCTTTGACGA-ATTTCCCATACGGTTTT 134428 Query 105769 GTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTT 105828 |||||| | || | |||||||| ||| | || ||| |||||||| | || Sbjct 134429 GTAGAGTTCTTTCAATTCATCTGGAATACCACCAATCGATTGGATTGAACCACGTGCAGC 134488 Query 105829 GACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAG 105888 || || ||| |||||| || | ||||| || | || | ||||||| | | | Sbjct 134489 GATGATTTGATTCTTCATCTCTGGTGTCCAAATGCCCAACTCCATGAGATCCTCCAACAA 134548 Query 105889 ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGT 105948 || ||||||||||| || || || || | | | | || ||||| | || Sbjct 134549 TTGTTTGTTGACAATTGTGAATTCACCAGCCAAGACACGACGACTGTAAATGTTTGAAGT 134608 Query 105949 GTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 106008 ||| ||||||||||||||||||||||| | |||||| || || || ||||||||||| Sbjct 134609 GTATGGTTCAAAGCATTCATTATTACCAAGGATTTGACTAGTTGAAGCGGTTGGCATTGG 134668 Query 106009 TGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATG--CGT-TCCTTGAGAACATC 106065 ||| ||||| || ||||| ||||| || |||| | | | ||||| | | || Sbjct 134669 TGCGATCAATAGTGAATTACGTAGACCACCTTTATTGACGATCTTATCCTTTAATTCGTC 134728 Query 106066 CC-AGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGG 106124 || | || | ||| |||||| | || || ||||||||||||||| || | |||| || Sbjct 134729 CCAATTCCAACGTGAACTTGGTGTAACATT-CCACATATCAAATTGGAGAATACCTTTGG 134787 Query 106125 ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCA----CAG 106180 | | || ||||| | || ||||||| | || | | | || |||||| || Sbjct 134788 ATGCTGGGGAACCTTGGAAACTCTCATATGTGCCATCACGTACTGCTAATTCATGAGAAG 134847 Query 106181 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 106240 || | || | ||| ||| ||||||||| ||| | |||||| | || Sbjct 134848 CT--GTTAAAGCG--GCGAAATAAATGGTTTCAGCGATTTCAACATTCAATTTAGATGCA 134903 Query 106241 TCATCTGAATCAAAT-GCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACC 106299 || | ||| ||| || || || ||| || ||||| || | |||||||| ||| Sbjct 134904 GCAACACTATCGAATGGCATA-CGCATTTGAATGAAAACATCGGCCAAACCTTGAATACC 134962 Query 106300 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGGGATAAAAAT 106358 | ||| || || | |||| | ||| || || || ||| |||| |||||||| | Sbjct 134963 AATACCGATTGGACGATGTCTGAGATTCGAAGTTTTTGC-CTCTACAACAGGATAAAAGT 135021 Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418 | | || || | ||| |||||| || | | ||| || || ||| || || Sbjct 135022 TACGATCGATAATAACGTTGAGATTTACAGTGATCAACTTGGTTATCTCAAAGAGGAATT 135081 Query 106419 CATAATCAAA------------------AGTGCGAGTCTCTTCATTGAC--AT--ACTTT 106456 || ||| || ||| ||| || | ||||| || | ||| Sbjct 135082 GATGATCGAATTCCTTCTCTTTTGGATCTGTG-GAGCCTGGTTTTTGACGAATGAATTTT 135140 Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 ||||| || || || || | ||| || ||||| | ||||| |||||| | | Sbjct 135141 GGAAGTGCAATAGAGGCAAGATTACATACAGCAATTTCATCAGGTGATGTGTATTGAATG 135200 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || ||||| | || || | || || || | ||||||||| || || Sbjct 135201 ATCTCAGTACAAAGATTACTGCTACTGATGGTACCGAGATTCTTTTGATTGGATTTAGCA 135260 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| |||||||| || | ||| | || || || || || ||||||| | |||| Sbjct 135261 TTGCAAGCATCCTTATACAATATGAATGGTGTACCAGTTTCAACTTGTGACTCCATAATT 135320 Query 106637 GCCTTCCACACATC-GGCGGCT--GGTACAATGGCGTTGGCCCGTC--CCTCCGCCTCGT 106691 || ||| | || | | || |||| | |||| || || || | Sbjct 135321 GCAAACCAAAGTTCTTGTGCCTTAATTACA--CGTCTTGGAAGATCTGGTGTTGCTTCAT 135378 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 106751 | ||| ||||||||| | ||||||| | || |||||||||||||||| | Sbjct 135379 ATTTTAAGTAGAGGGCACGATGCTCCTCAGAGTGAGTCTCAGAGAGACCTGGTGCCTCAT 135438 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 |||||| || || | ||| | |||| | ||||| || | ||| || | || | Sbjct 135439 TTGGACAAAAGAGTGCCCAATCACCATTTTGTTCAACACGTTCCATAAAGATATCACTGA 135498 Query 106812 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACC-TTGGTTGAGTCGT 106870 ||| || | | ||||| ||||| | |||||| | ||| || || | | Sbjct 135499 CCCAGAGAGCGTAGAAGAGGTCTCTTGCTCTCATCTCTTCTTTACCAGTGTTTTTCTTG- 135557 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | |||| ||||| | | ||| || ||||||||||| | ||||| || | | || Sbjct 135558 AGATCAATAAACTCAAATACATCGGCATGCCATGGCTCTAAGTAGACGGCAAAGGCACCT 135617 Query 106931 TTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 |||| || ||| |||| | ||||| || || || | || || || ||||||||| Sbjct 135618 TTTCTCTTACCACCACCTTGGTCAACATAACGTGCAGTATCATTGAAAACACGAAGCATT 135677 Query 106988 GGAATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 107046 || | | ||| | || | | |||||| || || |||||| | || | ||| | | Sbjct 135678 GGTACCAAACCGT-TGCTAGTACCATTGGTACCACGAATATAACTTTGAGCGGCACGAAT 135736 Query 107047 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 107106 | |||| | || |||||||| ||||| | ||||||||| ||||| | | | Sbjct 135737 CTTGTGGACGGCAATACCAATACCACCAGCACTTTTTGAGATTAATGCACATTGTTTTAA 135796 Query 107107 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 107166 || | |||||||| | |||||||||||||| | | | ||| ||||| ||||| Sbjct 135797 GGTATCGTAGATACCATCTATTGAGTCCTCCTTCATTTGAACCAAGAAACAACTTGACAT 135856 Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| ||| ||||||||| |||||||| | |||||| || || || |||||| || Sbjct 135857 CTGTGGTGATGGTGTACCTGCATTGAACAAGGTTGGAGTAGCATGGGTGAACAATTTCTG 135916 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 || | | | ||| || | | | || ||| |||||||| || ||||| || | | Sbjct 135917 AGAGAGATGTTTGTAGGTGTTAATGGCACTATCGATGTCTTCACCATGGATACCTACAGA 135976 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 107346 |||||||| ||||| | ||| || ||||| | | ||| | | || |||||||| Sbjct 135977 GACACGCATCAACATATGTTGTGGACGTTCCACAATTTTACCACCAATACGATGAAGATA 136036 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAA 107377 ||| | ||||||| |||||| || Sbjct 136037 TGAACGCTCTAATGTTTTGAAGCCAAAGAAA 136067 >seq608 Length=3544 Score = 100 bits (110), Expect = 3e-16 Identities = 199/287 (69%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 ||| | |||||| || | |||||||||||| | || ||| | || |||| ||||| Sbjct 1731 GATTTGACGATCGAATCTACCTGGACGAAGTAATGCTGGATCTAAGACATCACTACGATT 1790 Query 9245 CGTCGCGGCGATGACAACAATACCTGTTTCATTATCA-AAACCATCCATCTCTGTCAAAA 9303 || |||||| ||||| | ||| | | | || | ||||||||||||||| || | Sbjct 1791 GGTACCGGCGAATACAACCACACCCGATGTAG-ATGAGAAACCATCCATCTCTACTAATA 1849 Query 9304 GTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCT 9363 |||| || | || | || | |||||| || ||| | ||||||| | ||||| Sbjct 1850 GTTGATTCAATGTATTCTCTCTTTCATCGTTA--TGGAA-ACCACCACGTGATC-TTGCT 1905 Query 9364 TT-CCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 9422 | ||||| ||||| |||||||| ||||| || || || ||| |||| | || || | Sbjct 1906 CTACCCACTGCATCGATCTCATCGATGAATACGATGCAAGGTGTATTTGCACGAGCCTCT 1965 Query 9423 TCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTC 9469 | |||||| || | ||| | | || ||||||||||||||||| Sbjct 1966 TTAAAGAGGTCTCTAACACGAGATGGACCTACACCAACAAACATCTC 2012 >seq24 Length=311718 Score = 100 bits (110), Expect = 3e-16 Identities = 279/423 (66%), Gaps = 19/423 (4%) Strand=Plus/Plus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 ||||| | ||| || | |||||| | ||| | || | ||| | |||||| | || Sbjct 86479 GATCTGTCTATCGAATCTACCTGGTCTAAGTAATGCTTTATCCAAGATATCGGGTCTGTT 86538 Query 9245 CGTCGCGGCGATGACAACAATACCTGTTTCATTA--TCAAAACCATCCATCTCTGTCAAA 9302 || || || | ||| || ||| | ||||| | | ||||||||||| || |||| Sbjct 86539 TGTGGCAGCCAAGACCAC--TACGTTTTTCAATGGTTTGAAACCATCCATTTCAACCAAA 86596 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG---CTGGCATACCACCAGCACTGCGT 9359 ||||| || | || | || || |||||||||| | | | |||||| || | | Sbjct 86597 AGTTGATTTAATGTATTCTCACGCTCATCATTCGAACCAGAGAAACCACCTTTACCTC-T 86655 Query 9360 TGCTTTCCC-ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGC 9418 |||| | || | |||||||||||||| ||||| ||||| || ||| || | | || Sbjct 86656 TGCTCTACCGATTGCATCAATCTCATCTATGAAAACAATGCAAGGTGCGTTCTTTCTTGC 86715 Query 9419 GATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 9478 |||||| | || | ||| | | | || ||||||||||||||||| || || | Sbjct 86716 TTGTTCAAATAATTCTCTAACACGTGATGGACCAACACCAACAAACATCTCTACGAAATC 86775 Query 9479 TGCGGCGGAACATTGG-----ATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCG 9533 | | | || ||| | ||| || ||||| |||||||| || | ||| ||| Sbjct 86776 T-----GAACCACTGGTTGAAAAGAATGGTACATTTGATTCACCTGCGGTTGCTTTGGCA 86830 Query 9534 AGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCG 9593 | | || ||||| |||||||| || | | || ||||| | ||||||||| || Sbjct 86831 ATCAATGTTTTACCGGTACCTGGTGGTCCAACCAAGATTGCACCTCTTGGAATCTTTGCT 86890 Query 9594 CCA 9596 ||| Sbjct 86891 CCA 86893 >seq35 Length=230046 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 9366 CCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 9425 ||||| | ||||||||||| ||||| |||||||||||| ||| | | |||| |||| Sbjct 19110 CCCACAGAGTCAATCTCATCGATGAATACAATACATGGTGAATTCTTTCTGGCGGCTTCA 19169 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAA 9463 || ||||| || || | ||| || |||||||||||||| Sbjct 19170 AATAGATCACGTACACGTTTTGCTCCCACACCAACAAA 19207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973447364280