Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq57 178 1e-39 >seq57 Length=183543 Score = 178 bits (196), Expect = 1e-39 Identities = 608/933 (65%), Gaps = 27/933 (3%) Strand=Plus/Plus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 |||||| ||||| || |||||||||||||| | |||| || || ||||| || || Sbjct 135143 AAGTGCAATAGAGGCAAGATTACATACAGCAATTTCATCAGGTGATGTGTATTGAATGAT 135202 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTG 47993 |||| ||| ||||||| | |||| ||||| | ||| | ||||| ||| | Sbjct 135203 CTCAGTACAAAGATTACTGCTACTGATGGTACCGAGATTCTTTTGATTGGATTTAGCAT- 135261 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 | || || ||||| || | || || ||||| |||||||| | || || || || || Sbjct 135262 -TGCAAGCATCCTTATACAATATGAATGGTGTACCAGTTTCAACTTGTGACTCCATAATT 135320 Query 48054 GATTTCCAAACAGTCCTAG--CCTTTATAACAGCTCT----AGCTTTATTATCATG-TTC 48106 | ||||| || || | |||| || ||| ||| || | | | | || ||| Sbjct 135321 GCAAACCAAA--GTTCTTGTGCCTTAATTACACGTCTTGGAAGATCTGGTGT--TGCTTC 135376 Query 48107 GTATTTAGTATATA-ACTTCTCAAATTCATCCCCATACACATTATCTAAC---CCAGGAC 48162 ||||| || || | | | | | ||| || | | | || | || || Sbjct 135377 ATATTT--TAAGTAGAGGGCACGA--TGCTCCTCAGAGTGAGTCTCAGAGAGACCTGGTG 135432 Query 48163 ATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATAT 48222 ||||| ||||| | | || |||||| ||| | || || | |||||| |||| Sbjct 135433 CCTCATTTGGACAAAAGAGTGCCCAATCACCATTTTGTTCAACACGTTCCATAAAGATAT 135492 Query 48223 CTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCC 48282 | | ||| ||||| || | || || | ||| | ||||| || ||| | || Sbjct 135493 CACTGACCCAGAGAGCGTAGAAGAGGTCTCTTGCTCTCATCTCTTCTTTACCAGTGTTTT 135552 Query 48283 TTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA 48342 | || || |||| ||| || | || ||| ||||||||||| ||||| || | || | Sbjct 135553 TCTTGAGATCAATAAACTCAAATACATCGGCATGCCATGGCTCTAAGTAGACGGCAAAGG 135612 Query 48343 CACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTA 48402 ||||| || ||| ||| ||||| || | ||| | ||||||| || |||| | | Sbjct 135613 CACCTTTTCTCTTACCACCACCTTGGTCAACATAACGTGCAGTATCATTGAAAACACGAA 135672 Query 48403 ACATTGGGACAATACCATTTGATA-TACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 |||||| || | ||| ||| || |||||||||| || |||||||||| | || Sbjct 135673 GCATTGGTACCAAACC-GTTGCTAGTACCATTGGTACCACGAATATAACTTTGAGCGGCA 135731 Query 48462 CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGT 48521 | || || | | |||||| |||||||| || |||| || |||| ||||| || Sbjct 135732 CGAATCTTGTGGACGGCAATACCAATACCACCAGCACTTTTTGAGATTAATGCACATTGT 135791 Query 48522 TTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || | |||||| || || || ||||| || || |||| | | | |||||||| Sbjct 135792 TTTAAGGTATCGTAGATACCATCTATTGAGTCCTCCTTCATTTGAACCAAGAAACAACTT 135851 Query 48582 GACATTTGCGGATGA-CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCA 48640 ||||| || || ||| || |||| ||| || || ||||||| ||||| | ||| | Sbjct 135852 GACATCTGTGG-TGATGGTGTACCTGCATTGAACAAGGTTGGAGTAGCATGGGTGAACAA 135910 Query 48641 TTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACC 48700 ||||| || | ||| || || | ||| || ||| || || ||| ||||| Sbjct 135911 TTTCTGAGAGAGATGTTTGTAGGTGTTAATGGCACTATCGATGTCTTCACCATGGATACC 135970 Query 48701 TATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAA 48760 || ||| |||||||| ||||||| ||| || | ||| |||||||| | || Sbjct 135971 TACAGAGACACGCATCAACATATGTTGTGGACGTTCCACAATTTTACCACCAATACGATG 136030 Query 48761 AAGATATGATTTTTCCAATGTTTTAAAACCAAA 48793 ||||||||| || |||||||| || ||||| Sbjct 136031 AAGATATGAACGCTCTAATGTTTTGAAGCCAAA 136063 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCA----TAGAAATGCAT 47068 || || | ||| |||||||||||||||||||| || | |||| ||||||||||| Sbjct 134247 GTACGAAGATAGTACATACCAGTCTTTAAACC----CTTCTTCCAAGAGTAGAAATGCAT 134302 Query 47069 ACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATC 47128 ||| | ||| | | | | ||||| | || || ||| | | |||||| ||||| Sbjct 134303 TGAAGTGAGTTTTGCAAAGGTTGGTTCAGCGATGAAAACATTGAAACTTTGACTTTGATC 134362 Query 47129 AATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATAC 47188 || || ||||| | |||||| |||||||| | | | ||||| | || |||||||| Sbjct 134363 GATGAAAGCACCACGATCAGCAGCCATATCAATGAGAGTTCTTTGACGAATTTCCCATAC 134422 Query 47189 TGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 ||||| || | || ||| | || ||||| Sbjct 134423 GGTTTTGTAGAGTTCTTTCAATTCATCTGG 134452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562101794719080