Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq175 107 1e-18 seq224 102 6e-17 seq64 98.7 8e-16 seq62 93.3 3e-14 >seq175 Length=69793 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| ||| |||||||| ||||||||||| ||| | ||| | || ||| Sbjct 6026 ACCAAATGGAGAGTGGACTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCC 6085 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| || || || || || ||||| || | |||| || |||||||| | Sbjct 6086 AATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGA 6145 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||||| | | | || || | || || || | ||||| ||||| Sbjct 6146 ATTTTGGTTTTTACATTTTCAATATTGTCAGAACCTTCTACTTCTAAAGTAATGGTTTTA 6205 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||| ||||| || ||||| Sbjct 6206 CCAGTGAGAGTTTTAACAAAGATTTGCAT 6234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || ||| ||||||||||| |||||||| |||| | ||| | || ||| Sbjct 5570 ACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATCTTCC 5629 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| || || |||| || ||||| || | || | || || ||||| | Sbjct 5630 AATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGGATACCTTCTTTGTCTTGA 5689 Query 48678 ATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 || ||||||||| ||| | | | ||||| |||| || || | || || || || Sbjct 5690 AT-TTTTGTTTTCACATTTTCAATATTATCTGAGCCCTCAACTTCGAGAGTGATGGTCTT 5748 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || ||||| || ||||| Sbjct 5749 ACCAGTTAATGTCTTAACAAAGATTTGCAT 5778 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| || |||||||| ||||||||||| ||| | ||| | || ||| Sbjct 5342 ACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCC 5401 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| || || |||| || ||||| || | |||| || || ||||| | Sbjct 5402 AATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGA 5461 Query 48678 ATCTTTTGTTTTACA 48692 ||||| ||||||| Sbjct 5462 ATCTTGGTTTTTACA 5476 >seq224 Length=37943 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||||||||||||||| ||| | ||| |||| || || || ||||||||||| Sbjct 19983 TCTTTTTGAATATTGTAATCAGAAAGAGTACGACCGTCTTCTAATTGTTTACCGGCAAAA 20042 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || |||||||| | |||| || || ||||| || || ||| ||| Sbjct 20043 ATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTT 20102 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || | || || || | ||||| ||||| || || || ||||| ||| Sbjct 20103 TCAATGTTATCAGAACCTTCAACTTCTAAGGTAATAGTTTTACCAGTTAATGTTTTAACA 20162 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 20163 AAAATTTGCAT 20173 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| | ||| || || || || || |||||||||||||| |||||||| Sbjct 18807 CCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTATAATCAGAA 18866 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || || || || ||||| ||||| || | || ||||| || | || Sbjct 18867 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGG 18926 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| |||||| ||| ||| | | ||||| | || || Sbjct 18927 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCAACT 18986 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || || ||||| |||||||| ||||| Sbjct 18987 TCTAATGTGATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 19033 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| | ||| || || || || || ||||||||||||||||||||||| Sbjct 19719 CCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAG 19778 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || || || || ||||| ||||| || | || ||||| || | || Sbjct 19779 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGG 19838 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| |||||| || ||| | | ||||| | || || Sbjct 19839 ATACCTTCTTTGTCTTGAATCTTGGCCTTAACATTTTCAATGTTATCTGAACCTTCAACT 19898 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || || ||||||||||| || ||||| Sbjct 19899 TCTAATGTGATGGTTTTACCAGTTAAGGTTTTTACAAAGATTTGCAT 19945 Score = 82.4 bits (90), Expect = 6e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||||||||||||||| ||| | ||| |||| || || || |||||||| || Sbjct 19299 TCTTTTTGAATATTGTAATCAGAAAGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAA 19358 Query 48636 ATCAGTCGCTGTTGATC-CGTGGGA 48659 || || || |||||||| |||||| Sbjct 19359 ATAAGACGTTGTTGATCTGGTGGGA 19383 >seq64 Length=175976 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||| || || |||||||||||||| ||||| || ||| | ||| | || Sbjct 77787 AAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCTGAGAGAGTACGACCATCC 77846 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || ||||| ||||| || || || ||||| || | || | ||||| || || Sbjct 77847 TCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGGATACCCTCTTTATCT 77906 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||||||| ||| ||| | | || || | || || || | ||||| ||| Sbjct 77907 TGAATCTTTGCTTTGACATTTTCAATGTTGTCAGAACCTTCTACTTCGAGGGTAATGGTT 77966 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||||||||||||| ||||| Sbjct 77967 TTACCGGTCAAGGTTTTTACAAAAATTTGCAT 77998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| ||||| || ||| | ||| | || || || || ||||| || || Sbjct 77580 TCTTTTTGAATATTATAATCTGAGAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAA 77639 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | || |||||||| | || | ||||| || || || || ||||||| Sbjct 77640 ATTAATCTTTGTTGATCTGGTGGGATACCCTCTTTATCTTGGATTTTGGCTTTTACATTT 77699 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || |||| || || | || || ||||| || || |||||||||||| Sbjct 77700 TCAATGTTATCAGAACCCTCTACTTCGAGTGTGATTGTTTTACCGGTTAAAGTTTTTACA 77759 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 77760 AAAATTTGCAT 77770 >seq62 Length=176758 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || ||| ||||||||||| ||||| ||||| ||| | ||| | || || Sbjct 76791 ACTAAATGGAGGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTACGACCATCTTCT 76732 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || |||||||| || || || || |||||||| | |||| ||| || ||||| Sbjct 76731 AATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGG 76672 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | || || | || || |||| || || ||||| Sbjct 76671 ATTTTGGCTTTAACATTCTCGATGTTATCAGAACCTTCAACTTCCAATGTGATTGTTTTA 76612 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||| |||||||| ||||| Sbjct 76611 CCAGTGAGAGTTTTAACAAAAATTTGCAT 76583 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || |||||||||||| ||||||||||| ||| | ||| |||| || Sbjct 77019 ACTAAATGGAGAGTTGACTCTTTTTGAATGTTGTAATCAGAGAGAGTACGACCGTCTTCT 76960 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || || |||||||| || || || || |||||||| | |||| || || ||||| Sbjct 76959 AATTGTTTACCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTC 76904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || |||||||||||| || |||||||| ||| | ||| |||| || Sbjct 77475 ACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTCTTCT 77416 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || || ||||||||||| || | || |||||||| | |||| || || ||||| Sbjct 77415 AATTGTTTACCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTC 77360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380932971251031