Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq41 154 3e-32 seq34 98.7 2e-15 >seq41 Length=217993 Score = 154 bits (170), Expect = 3e-32 Identities = 330/486 (68%), Gaps = 13/486 (3%) Strand=Plus/Minus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTTGATGATCTAATTCAGAT 150366 |||||||||| | |||||| | |||||| | || |||| || | | | ||| ||| Sbjct 123543 AGAAGGTAAATTAGATCCAGTCATTGGTAGAGATGATGAAATTCGTCGTGTCATT-AGAG 123485 Query 150367 T-CTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAA 150425 | || || | | ||| ||||| || | |||| |||||||||| ||||||||||| | Sbjct 123484 TACTCTCAAGAAGAACAAAAAACAACCCAGTGTTAATTGGTGAACCGGGTGTTGGTAAGA 123425 Query 150426 CACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGA 150485 || | | || || || ||||||||||| || | | ||||||| ||||||| | ||| Sbjct 123424 CAGCAGTGGTCGAAGGTTTAGCACAACGTATTGTTCGTGGTGATATTCCAGACAATTTGA 123365 Query 150486 AAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTG 150545 | | || | || | ||| |||||||||| ||| ||||||| | |||||||||| Sbjct 123364 ATGCACGTG---TCATTGCATTGGATATGGGTGCTCTTATTGCTGGTGCAAAGTATCGTG 123308 Query 150546 GTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATGATG--- 150602 | || || ||||||||| || | | || |||| | || || ||| || Sbjct 123307 GCGACTTTGAAGAACGTTTAAAAGCCGTACTCAAAGAGGTTAAGGATTCAAATGGTGGCA 123248 Query 150603 TTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTT 150662 | ||| | ||||| ||||| || ||| | ||||||||||| ||| | ||| Sbjct 123247 TCATTTTATTCATAGATGAGATTCATTTGGTATTGGGTGCTGGTAAAACT---GATGGTG 123191 Query 150663 CTTTGGATATGAGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATC 150721 || ||||| ||| || | || || || | | | ||||| ||||| || Sbjct 123190 CTATGGAT-GCAGCAAACTTATTGAAGCCAATGTTGGCAAGAGGTGAGCTTCGTTGTATT 123132 Query 150722 GGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGT 150781 ||||| ||||| | |||||||||||| || || | ||||| ||| ||||| | | ||| Sbjct 123131 GGTGCCACAACATTGGATGAATATCGTCAATACGTCGAAAAGGATCCAGCATTCGAACGT 123072 Query 150782 CGTTTC 150787 |||||| Sbjct 123071 CGTTTC 123066 >seq34 Length=229786 Score = 98.7 bits (108), Expect = 2e-15 Identities = 270/405 (67%), Gaps = 18/405 (4%) Strand=Plus/Plus Query 150379 AACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGA 150438 ||||||||| ||| | ||| |||||||||||||||||||||||||| || ||||| Sbjct 103532 AACCAAAAACAATCCAGTTTTAATTGGTGAACCAGGTGTTGGTAAAACAGCCATAGTTGA 103591 Query 150439 CGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAAT 150498 ||||| || ||| | || ||||||||||| || ||| ||| ||||| | || Sbjct 103592 AGGATTGGCTCAAAGAATTATAAATGGTGATGTACCTGATAGTAT-AAAGA--ATAAACG 103648 Query 150499 TCTTT---CTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGA 150555 | ||| | ||| || | | || || ||||||| | |||| | | ||||| ||||| Sbjct 103649 TGTTTTAACATTGGATTTAGCATCAATTGTTGCTGGTGCAAAGTTTAGAGGTGATTTCGA 103708 Query 150556 AGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGC---GATGATGTTATTCTG 150610 ||| | || | ||||| ||| | || || | | | | ||| || ||| | Sbjct 103709 AGAGAGAATGAAATCAATT--CTAAAGGATGTAGCACATTTCAAAGGTGAGGTAATTTTA 103766 Query 150611 TTCATCGATGAAATCCATACTATTA-TGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGA 150669 ||||| |||||| | ||||| |||| | ||||| || || || || || | |||| Sbjct 103767 TTCATTGATGAACTTCATAC-ATTAGTTGGTGCAGGAGCAGTTGAAGGTGG---TATGGA 103822 Query 150670 TATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATCGGTGCAAC 150729 | |||||||||||||| | | | ||||| | | | | ||||| || Sbjct 103823 TGCATCTAATATGTTAAAACCACAATTGGCAAGAGGTGATTTACATTGTGTAGGTGCGAC 103882 Query 150730 AACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACT 150774 || | |||||| | ||| |||||||||| || ||||||| Sbjct 103883 TACAACTGCAGAATATAGAAAATACATTGAAAAGGACCCAGCACT 103927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147575740608506