Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq103 232 9e-56 seq254 84.2 3e-11 >seq103 Length=128160 Score = 232 bits (256), Expect = 9e-56 Identities = 393/561 (70%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 47752 GATTCCTCAACAAACTGACGGACAGAATATTGATTT---CCTGTGGCAATAACAAAATCA 47808 |||| ||||||||| | ||| || |||| || || || ||||| || || ||||| Sbjct 27356 GATTTCTCAACAAATTCACGTACTGAAT---GAGTTTCACCAGTGGCGATGACGAAATCC 27412 Query 47809 TCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCC 47868 || |||| |||||||| | |||||||||||| || ||||| |||||||| ||||| ||| Sbjct 27413 TCTGGTTTCTCTTGTTGTAACATTAACCACATTGCTTCGACGTAATCTCTAGCATGGCCC 27472 Query 47869 CAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATT 47928 || ||||| |||| | ||| || | || | || | ||||| || | | Sbjct 27473 CAATCACGTTTGGCATTGATATTACCCAAGTAGAGTATTTCATCTTTACCA-CATGCAAT 27531 Query 47929 GCTTTTAATGCT-CTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTC 47987 | || | | || ||||| | ||||||||| ||| ||| | | ||| || || Sbjct 27532 ACCAGCAACGAAACGGGTGATCTTTCTAGTTACAAAGGTTGGACCTCTACGTGGTGACTC 27591 Query 47988 ATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTAC 48047 |||||| || | ||||||| |||| || || || |||||| |||||||||||| ||| Sbjct 27592 ATGATTGAATAAAATACCATTACATGCGTAGATATCGTATGCTTCACGATAGTTTACTAC 27651 Query 48048 TATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGT 48107 ||||| || |||| ||||||||||| | || || |||||||||||||| || || || Sbjct 27652 AATCCAATATGCATATTGTTTTGCAACAGCGTATGGTGAACGTGGATAGAATGGAGTAGT 27711 Query 48108 CTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAG-A 48166 ||||| ||||| ||||||| || |||||||| | |||| ||| || ||||| ||| | Sbjct 27712 CTCTGATTGTGGGATCTCTTGAACTTTACCATATAATTCAGAGGTTGAAGCTTGGTAGTA 27771 Query 48167 TACGAACCCTATCTTCCATCTCAAGCAA--ACGGACTGCCTCAAGCACTCTCAGGGTGCC 48224 | || | ||| ||| || ||| ||| | ||| || | | | || || Sbjct 27772 TTTGACTTTTTTCTCTAATC-CA--CAACTACGAATTGCATCCAATAAACGAAGACATCC 27828 Query 48225 TATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTG 48284 || |||| | |||||||||||| | ||| || || || || || |||||||| || Sbjct 27829 TAAACCATCAACATCACCAGTATACTCAGACATATCGAATGATACTTTAACATGACTTTG 27888 Query 48285 TGCCCCAAGATTATAAATCTC 48305 ||| || | |||||| || || Sbjct 27889 TGCTCCTAAATTATATATTTC 27909 >seq254 Length=21133 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/160 (74%), Gaps = 8/160 (5%) Strand=Plus/Minus Query 19914 AGTAGAGACATAATCTAGAAAATATAATGGTTCAGCACC-AGAACATATAACGTCATTGA 19972 ||||| | |||||||| ||| ||||||||||||||||| ||||| | ||| ||||||| Sbjct 9071 AGTAGCAAAATAATCTAAAAAGTATAATGGTTCAGCACCTTGAACA-ACAACATCATTGA 9013 Query 19973 CGCACATAGCAACGAGATCCTGACCAATAGTGGTGTAATCATTAGCAA-TCCTACAG--A 20029 | ||||| || || | ||| ||||||| | | || | || ||| | || || | Sbjct 9012 CACACATTGCCACTAAATCGATACCAATA---CTATCATGAATACCAAGTTCTTGAGCAA 8956 Query 20030 TATTAATTTTAGTTCCGACACCATCGGCACCAGATACTAA 20069 | || | ||| || || |||||||| | ||| |||||||| Sbjct 8955 TCTTTAATTTTGTACCAACACCATCTGTACCTGATACTAA 8916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665486106276040