Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq57 320 2e-82 seq35 87.8 2e-12 seq608 84.2 3e-11 seq24 84.2 3e-11 >seq57 Length=183543 Score = 320 bits (354), Expect = 2e-82 Identities = 1182/1829 (65%), Gaps = 52/1829 (3%) Strand=Plus/Minus Query 75145 TTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCAT 75204 || |||||| ||||||| | ||| |||||||| || | | ||| | | | Sbjct 136067 TTTCTTTGGCTTCAAAACATTAGAGCGTTCATATCTTCATCGTATTGGTGGTAAAATTGT 136008 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 |||| ||||| | ||||| ||||| ||| | | || ||||| || |||||||| || Sbjct 136007 GGAACGTCCACAACATATGTTGATGCGTGTCTCTGTAGGTATCCATGGTGAAGACATCGA 135948 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAAC 75324 | || | | | || ||| | | | || || |||||| || || || ||||| Sbjct 135947 TAGTGCCATTAACACCTACAAACATCTCTCTCAGAAATTGTTCACCCATGCTACTCCAAC 135888 Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384 | | |||||||| ||||||||| ||| |||||||| ||||| ||| | | | || Sbjct 135887 CTTGTTCAATGCAGGTACACCATCACCACAGATGTCAAGTTGTTTCTTGGTTCAAATGAA 135828 Query 75385 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 75444 |||||||||||| | |||||||| | || | | | ||||| ||||||||| | Sbjct 135827 GGAGGACTCAATAGATGGTATCTACGATACCTTAAAACAATGTGCATTAATCTCAAAAAG 135768 Query 75445 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 75504 ||||| |||||||| || | |||| | | | ||| | || | |||||| || Sbjct 135767 TGCTGGTGGTATTGGTATTGCCGTCCACAAGATTCGTGCCGCTCAAAGTTATATTCGTGG 135708 Query 75505 GACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 || |||||| | | || | ||| | | ||||||||||| || || || | || || | Sbjct 135707 TACCAATGGTACTAGCA-ACGGTTTGGTACCAATGCTTCGTGTTTTCAATGATACTGCAC 135649 Query 75564 GCTATGTAAATCAAGCGGGGCGTC---GCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 | ||||| | |||| || || | || || || | || |||||||| || |||| Sbjct 135648 GTTATGTTGACCAAGGTGGTGGTAAGAGAAAAGGTGCCTTTGCCGTCTACTTAGAGCCAT 135589 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAA-GGTGACGAAGAGGCT 75679 ||||||||||| | | ||||| |||| | | | || || ||| | |||||| Sbjct 135588 GGCATGCCGATGTATTTGAGTTTATTGATCT-CAAGAAAAACACTGGTAAAGAAGAGATG 135530 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 | ||||| ||||| | | || ||| | || | || ||| | || ||||| Sbjct 135529 AGAGCAAGAGACCTCTTCTACGCTCTCTGGGTCAGTGATATCTTTATGGAACGTGTTGAA 135470 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 | |||| | ||| | || || |||||| | |||||||||||||||| || | Sbjct 135469 CAAAATGGTGATTGGGCACTCTTTTGTCCAAATGAGGCACCAGGTCTCTCTGAGACTCAC 135410 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCG 75856 ||||||| | ||||||||| ||| ||||||| | ||| | ||| || Sbjct 135409 TCTGAGGAGCATCGTGCCCTCTACTTAAAATATGAAGCA-ACACCAGATCTTCCAAGACG 135351 Query 75857 ACTGTACC--AGCCGCC-GATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 |||| || | | || ||||| || ||| | | ||||| || ||||| Sbjct 135350 --TGTAATTAAGGCACAAGAACTTTGGTTTGCAATTATGGAGTCACAAGTTGAAACTGGT 135293 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 ||||||| || | || ||||||||||| || || || ||||||||| | || Sbjct 135292 ACACCATTCATATTGTATAAGGATGCTTGCAATGCTAAATCCAATCAAAAGAATCTCGGT 135233 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || |||| ||| |||||||| || || || | | |||||| ||||| | Sbjct 135232 ACCATCAGTAGCAGTAATCTTTGTACTGAGATCATTCAATACACATCACCTGATGAAATT 135173 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT--AT--GTCAATGAAGAGACTCG 76089 ||||| || ||| | || || || || |||||||| | || ||||| | || ||| Sbjct 135172 GCTGTATGTAATCTTGCCTCTATTGCACTTCCAAAATTCATTCGTCAAAAACCAGGCTC- 135114 Query 76090 CACT------------------TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGT 76131 ||| || ||| || || || ||| || || ||| | | Sbjct 135113 CACAGATCCAAAAGAGAAGGAATTCGATCATCAATTCCTCTTTGAGATAACCAAGTTGAT 135054 Query 76132 TACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAA 76190 || |||||| ||| | || || | || |||||||| |||| ||| || || Sbjct 135053 CACTGTAAATCTCAACGTTATTATCGATCGTAACTTTTATCCTGTTGTAGAG-GCAAAAA 134995 Query 76191 AGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTA 76250 || ||| | |||| | || || ||| | ||| |||||||| | || ||||| || | Sbjct 134994 CTTCGAATCTCAGACATCGTCCAATCGGTATTGGTATTCAAGGTTTGGCCGATGTTTTCA 134935 Query 76251 TTTTGTGCCGCTACGC-ATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTT 76309 || || || || ||| ||| | || || | |||||| | ||| | Sbjct 134934 TTCAAATGCG-TATGCCATTCGATAGTGTTGCTGCATCTAAATTGAATGTTGAAATCGCT 134876 Query 76310 GAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCC 76369 |||||||| ||| ||| | | || | |||||| || | | | || | Sbjct 134875 GAAACCATTTATTTCGCCGCTTTAACAGCTTCTCATGAATTAGCAGTACGTGATGGCACA 134816 Query 76370 TATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAA 76429 ||||||| || | ||||| || || ||| |||| | || || |||||||||||| || Sbjct 134815 TATGAGAGTTTCCAAGGTTCCCCAGCATCCAAAGGTATTCTCCAATTTGATATGTGG-AA 134757 Query 76430 GGTGAAACCAAGCTCAACTACGACT-GGGATGTTCTCAAGGA-ACG--CATCAAGGAGAA 76485 || | |||||| ||| | || | |||| | | ||||| | | | |||| | Sbjct 134756 TGTTACACCAAGTTCACGTTGGAATTGGGACGAATTAAAGGATAAGATCGTCAATAAAGG 134697 Query 76486 GGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTT 76545 ||||| ||||| || ||||| |||||||||||||| || || || |||||| | Sbjct 134696 TGGTCTACGTAATTCACTATTGATCGCACCAATGCCAACCGCTTCAACTAGTCAAATCCT 134637 Query 76546 GGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGC 76605 ||||||||||||||||||||||||||||| ||||||| ||| | | | | || Sbjct 134636 TGGTAATAATGAATGCTTTGAACCATACACTTCAAACATTTACAGTCGTCGTGTCTTGGC 134577 Query 76606 AGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTG 76665 ||||| || ||||||||||| || | | | || |||| | || | || | || Sbjct 134576 TGGTGAATTCACAATTGTCAACAAACAATTGTTGGAGGATCTCATGGAGTTGGGCATTTG 134517 Query 76666 GTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGA 76725 | | || |||||| ||| || | || ||||||| || ||| || | Sbjct 134516 GACACCAGAGATGAAGAATCAAATCATCGCTGCACGTGGTTCAATCCAATCGATTGGTGG 134457 Query 76726 TATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGA--T 76783 ||| |||||||| | || | |||||| || || |||||||| | ||||| | Sbjct 134456 TATTCCAGATGAATTGAAAGAACTCTACAAAACCGTATGGGAAAT--TCGTCAAAGAACT 134399 Query 76784 GTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTA 76843 ||||||| ||||| || ||||||||| ||||| ||||||||||||||| | ||| | Sbjct 134398 CTCATTGATATGGCTGCTGATCGTGGTGCTTTCATCGATCAAAGTCAAAGTTTCAATGTT 134339 Query 76844 TTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAG 76903 ||||| | ||||| | | || ||| |||| |||||| | ||| | ||||| || Sbjct 134338 TTCATCGCTGAACCAACCTTTGCAAAACTCACTTCAATGCATTTCTACTCTTGGAAGAAG 134279 Query 76904 GGGCTCAAAACCGGAATGTACTATCTCCG 76932 || | || || || ||||||||||| || Sbjct 134278 GGTTTAAAGACTGGTATGTACTATCTTCG 134250 >seq35 Length=230046 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 175408 TTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAA 175467 |||||||||||||| || ||| | || || ||||| |||||| |||| | | ||| | Sbjct 19207 TTTGTTGGTGTGGGAGCAAAACGTGTACGTGATCTATTTGAAGCCGCCAGAAAGAATTCA 19148 Query 175468 CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGG 175505 ||||||||||| ||||| ||||||||||| | ||||| Sbjct 19147 CCATGTATTGTATTCATCGATGAGATTGACTCTGTGGG 19110 >seq608 Length=3544 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/189 (71%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 175402 GAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAA 175461 ||||||||||||||||| ||| | | ||| | || |||||| || || || | | Sbjct 2012 GAGATGTTTGTTGGTGTAGGTCCATCTCGTGTTAGAGACCTCTTTAAAGAGGCTCGTGCA 1953 Query 175462 AATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCA-AGCAACGCAGCGC 175520 ||| ||| || || || ||||| |||||||| ||||| ||||| | ||||| || Sbjct 1952 AATACACCTTGCATCGTATTCATCGATGAGATCGATGCAGTGGGTAGAGCAAGATCACG- 1894 Query 175521 TGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGAT 175580 ||||||| | ||| || || || ||||| | ||| | ||||||||| | ||||| Sbjct 1893 TGGTGGT-TTCCA--TAACGATGAAAGAGAGAATACATTGAATCAACTATTAGTAGAGAT 1837 Query 175581 GGATGGCTT 175589 |||||| || Sbjct 1836 GGATGGTTT 1828 >seq24 Length=311718 Score = 84.2 bits (92), Expect = 3e-11 Identities = 210/319 (66%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 175186 TTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTT 175245 || |||||||||| || ||| | || || | || ||||||| |||| | ||| Sbjct 86982 TTTAGTGATGTTGCAGGTCTTGGTGAGGCAAAGGTAGAGATTGAAGAATTTGTAAACTTT 86923 Query 175246 CTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTC 175305 | || | || ||| || | || | ||| || ||||| || |||| || | | Sbjct 86922 TTAAAAAATCCAAAGAAATTTCATGACATTGGAGCAAAGATTCCAAGAGGTGCAATCTTG 86863 Query 175306 GCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAAT 175365 | || |||||||| || || || | | ||| ||| | ||| |||||||||||| Sbjct 86862 GTTGGACCACCAGGTACCGGTAAAACATTGATTGCCAAAGCAACCGCAGGTGAATCAAAT 86803 Query 175366 GTCCCATTCAT-----CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGG 175420 || |||||| | |||||| | || | || || ||||||||||||||||| | Sbjct 86802 GTACCATTCTTTTCAACCAGTGGTT-----CAGATTTCGTAGAGATGTTTGTTGGTGTTG 86748 Query 175421 GTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCT 175480 || | | | ||| | || | |||||| || | | || ||| || ||||| | Sbjct 86747 GTCCATCACGTGTTAGAGAATTATTTGAACAAGCAAGAAAGAACGCACCTTGCATTGTTT 86688 Query 175481 TCATTGATGAGATTGATGC 175499 |||| |||||||||||||| Sbjct 86687 TCATAGATGAGATTGATGC 86669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596562165251360