Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq24 150 5e-31 seq128 118 3e-21 seq22 104 7e-17 seq35 100 8e-16 seq21 96.9 1e-14 >seq24 Length=311718 Score = 150 bits (166), Expect = 5e-31 Identities = 333/496 (67%), Gaps = 5/496 (1%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||| || ||||| | | | ||||||| || || ||||||| ||||||||| || Sbjct 86486 CTATCGAATCTACCTGGTCTAAGTAATGCTTTATCCAAGATATCGGGTCTGTTTGTGGCA 86545 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 ||||| || || | || | | || || |||||||| |||| |||||| Sbjct 86546 GCCAAGACCACTACGTTTTTCAATGGTTTGAAACCATCCATTTCAACCAAAAGTTGATTT 86605 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 | ||| | || | |||||||| ||||| || |||| | | || | | || Sbjct 86606 AATGTATTCTCACGCTCATCATTCGAACCAGAGAAACCACCTTTACCTCT---TGCTCTA 86662 Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || | |||||||| || || ||||||| | || || | || | ||| || | || Sbjct 86663 CCGATTGCATCAATCTCATCTATGAAAACAATGCAAGGTGCGTTCTTTCTTGCTTGTTCA 86722 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||||||||| ||||| |||| |||| ||||||| |||| ||||| || || ||| | Sbjct 86723 AATAATTCTCTAACACGTGATGGACCAACACCAACAAACATCTCTACGAAATCTGAA-CC 86781 Query 289150 GATACTTG-AATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | ||| || ||||| |||||||| ||| ||||| ||| | || | | ||| || Sbjct 86782 ACTGGTTGAAAAGAATGGTACATTTGATTCACCTGCGGTTGCTTTGGCAATCAATGTTTT 86841 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||| || || |||||||| | || | | || |||| | ||||| ||| | Sbjct 86842 ACCGGTACCTGGTGGTCCAACCAAGATTGCACCTCTTGGAATCTTTGCTCCAATGTCATG 86901 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 | |||||| || | |||||||| | ||||| ||| |||| || ||||||||| | Sbjct 86902 AAATTTCTTTGGATTTTTTAAAAAGTTTACAAATTCTTCAATCTCTACCTTTGCCTCACC 86961 Query 289329 ACATCCTGCTACATCA 289344 | ||||| |||||| Sbjct 86962 AAGACCTGCAACATCA 86977 >seq128 Length=109205 Score = 118 bits (130), Expect = 3e-21 Identities = 232/341 (68%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| ||||| ||| || ||| || || ||||| |||| | |||||| Sbjct 31636 ATTTCTAACGGTAGCATCGTATTTAATAGAAACATCCTCCATTGCTTTGACGAGACGACG 31695 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||||||||| ||| ||| |||||||| || ||||| || | ||| | | |||||| Sbjct 31696 TTGAATATAACCGGTTTCAGAGGTTTTTACGGCGGTATCGATCAAACCTTCTCTACCACC 31755 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| || || | || | || || || | || | | ||| |||| ||||| Sbjct 31756 CATAGCATGAAAAAAGAATTCCTGTGGAGTTAAGCCACGAAGATAAGAGTTCTCTACGAA 31815 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 |||||| ||| || || ||| ||| || || ||||| | || || | | | Sbjct 31816 ACCACGACTCTCTGGACCATAGTCATCCTTTGTGAAATGTGGTAATGTTCTACTTTGGAA 31875 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 ||| |||| ||||| || || || || || || || || | || | |||||||| || Sbjct 31876 ACCGAATGGAATACGTTTACCTTCGACATTTTGTTGACCTACACAGGCCATCATCTGTGA 31935 Query 302838 AATATTTAAATCACTG--CCCTTGGAGCCAGCATTTACCAT 302876 ||||| ||| | || || || || || ||| ||||||| Sbjct 31936 GATATT--AATGAATGAACCTTTTGAACCTGCAGTTACCAT 31974 >seq22 Length=316226 Score = 104 bits (114), Expect = 7e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 60215 AATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTT 60274 |||||||| || || || || || || || | ||| || | ||| || || | || | Sbjct 102080 AATAGATTGATATTATTTGAACCAACAAACTCTTGTGCCATACCGACGATGGTTGAATAT 102139 Query 60275 AAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCG 60334 ||||| || ||||| ||||||||| |||||||||| |||||||| ||| | ||||| ||| Sbjct 102140 AAACTTGCCTCACCATGATGATATGCAGAATGTTCAGAAACATAACCAATCAATTGAGCG 102199 Query 60335 ACTTTAATTTCGGAGTGGAGTTTTTTCTTGAA 60366 |||||||| || | || ||| ||||||| Sbjct 102200 ACTTTAATCTCTTTCTTAAGGTTTCTCTTGAA 102231 >seq35 Length=230046 Score = 100 bits (110), Expect = 8e-16 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||| |||| ||||| || || ||||| | | ||| || ||||| | ||| || | | Sbjct 19109 ACCCACAGAGTCAATCTCATCGATGAATACAATACATGGTGAATTCTTTCTGGCGGCTTC 19168 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||||| || | |||||| |||||| | ||||||| | ||| ||||||| ||| | Sbjct 19169 AAATAGATCACGTACACGTTTTGCTCCCACACCAACAAATGCTTCCTCAAATTCGGAACC 19228 Query 289149 G--GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 ||| | |||||||| ||| ||| |||||||| | || | | || | | ||| Sbjct 19229 ATTGATCGT--AATGAATGAAACACGTGCCTCGCCTGCCAATGACTTGGCTAACAACGTC 19286 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 ||||| || |||||||||||| | ||||| | |||||||| Sbjct 19287 TTACCGGTACCAGGTGGTCCCACCAATAGTATACCCTTTGG 19327 >seq21 Length=320491 Score = 96.9 bits (106), Expect = 1e-14 Identities = 280/423 (66%), Gaps = 10/423 (2%) Strand=Plus/Minus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATC-A 233329 ||||||| ||||| | | ||||||||||||| ||||| | ||| | ||||||| | | Sbjct 130369 TAGCACCATGAGCCAAAAGGGAATCACGTTCCATCTCACCGAAACGAATACCACCACCTA 130310 Query 233330 TTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAA 233389 || || ||| | | || ||||||||||||| || | | ||| ||||||| || Sbjct 130309 CTTTACG-ACCTTTAATTGGTTGACGAGTTAAAGCATTAACTTTACCGAGAGCACG-TAC 130252 Query 233390 TTAAT-TTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAG 233448 || || |||||||||||||||||| | ||| ||| ||||| ||| | ||| | Sbjct 130251 TTGATATTTATCTTTAACCATATGACGTAATCTTTGATAGTAACAAACACCGAAAAAGAT 130192 Query 233449 TTCTGCGTGTAATTGTTCCCCAGATTCACCGCTGTATAAAACTTCATTACCCGATGAATT 233508 ||| | || | || |||| ||||||||| | ||||||||| | ||| Sbjct 130191 TTCACATTCAAACTCTTTACCAGTGGTACCGCTGTACATTTGTTCATTACCGAAACGATT 130132 Query 233509 GTAACCAATATCTTTTAATAGAGAACCAAATACCT-GA-TGCTTTGGACCTTTATTAGCA 233566 | ||||| | | |||| | |||||| | | || |||| || ||| | | | Sbjct 130131 GAAACCAGCTTTTGATAATTGTTCACCAAAGAATTCGATTGCTGTGTTATTTTCATCGAA 130072 Query 233567 ----AACGCAGTACAATCACCAAAACCACCATACGTCGCACACGCTTTACCCATTAAAGT 233622 || || || ||| || ||||| | |||| |||||||| |||| | Sbjct 130071 TTGGAAAGCTGTTGCATCTTGGAATTTACCATGAATAGCACCTGCTTTACCTGCTAAAAT 130012 Query 233623 TTCTATCAACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTGGATTGATAATTAAATC 233682 |||| ||| ||| || ||||| | ||| | ||||| |||||||||||||| ||| Sbjct 130011 CTCTACTAACATACCAATTGTCATACGCGATGGGAAAGCGTTTGGATTGATAATTACATC 129952 Query 233683 TGG 233685 ||| Sbjct 129951 TGG 129949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471798798909989