Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq201 107 2e-18 seq203 91.5 2e-13 seq38 87.8 2e-12 seq4 84.2 3e-11 >seq201 Length=50797 Score = 107 bits (118), Expect = 2e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 165971 GGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACAAAATTTATGTGAAACTATA 166030 || |||||||| |||||||| ||| | |||||||||||| ||| | ||| || Sbjct 29056 GGTTATGTTGCTGAACAAACTTCATATCATCATGGTGAACAATCTTTGAATTCAACAATC 29115 Query 166031 ATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGCATTACTTGAACCTGATGGT 166090 |||| | || || ||||| ||||| |||||||| | |||| | ||| | |||| Sbjct 29116 GTTAAAATGGCTCATGATTTCGTTGGCTCAAATAATTTGCCATTGTTAACACCAGCTGGT 29175 Query 166091 CAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTGCATCAAGATATATTTATACC 166150 ||||||||||| | ||| |||| ||| ||||||||| | |||||||||||| || Sbjct 29176 CAATTTGGTACTCGTTTACAAGGTGGTTCAGATTCTGCATCGGCAAGATATATTTTCACA 29235 Query 166151 AAAC 166154 |||| Sbjct 29236 AAAC 29239 >seq203 Length=49749 Score = 91.5 bits (100), Expect = 2e-13 Identities = 129/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 114972 TACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAAAATGGTATTGAAGTAGG 115031 ||| ||||| ||||||| ||||||| |||||| | |||||| ||||| || Sbjct 27682 TACCTATGGTAGAATTGCACCAAGATCAGGTTTAGCATGGAAAAATTTCATTGATTGTGG 27741 Query 115032 AGCAGGTGTTGTTGATGAAGATTATCGAGATAATTTAATGGT-TA-TTTTATATAACCAT 115089 || ||||| | ||| |||||| ||| ||| | |||| || |||||| ||||| Sbjct 27742 CGCTGGTGTAATCGATTCAGATTACAGAGGCAATGT--TGGTGTAGTTTTATTCAACCAC 27799 Query 115090 TCAGATGTTGATTTTAAAATTGAAGTTAAAGATAGGATTGCGCAATTAATTGTTGAAA 115147 ||||||||||||||| ||||| ||| || || ||||| |||||||| |||||| Sbjct 27800 TCAGATGTTGATTTTTCAATTGCTGTTGGTGACAGAATTGCTCAATTAATCTTTGAAA 27857 >seq38 Length=218761 Score = 87.8 bits (96), Expect = 2e-12 Identities = 215/321 (67%), Gaps = 14/321 (4%) Strand=Plus/Plus Query 90890 GGGCTGCACAAGATACTATGCCTTTAAATTGGTCTTTACCTTTGGCCAAAGAACTTG--- 90946 |||| |||||| ||| ||| | ||||| | ||||| || || ||||| || Sbjct 162747 GGGCAGCACAACCTACAATGGGAATGGATTGGGCATTACCATTAGCAAAAGATATTCAAC 162806 Query 90947 CTTTAGTTAAAAAAGAAACAATTGTTTCTTTTGGTGGAGCAAGTAATCCAGATATTTCAT 91006 | | | |||||||| || |||| |||||||| ||| || | |||||| || Sbjct 162807 CATCAAATAAAAAAGTTG---TTATTTCATTTGGTGGTGCATCAAACCAAGATATCTCTA 162863 Query 91007 CTGAATTTTCAATAGATGAACTTATTCAAACATATCTTGATGTTATTGAAATGTA-CAAC 91065 | ||| ||| | || || | ||| |||| ||| | | | ||||| ||||| ||| Sbjct 162864 TTCAATATTCCGTTGAGAAATTGATTGAAACCTATGGTAAATTCATTGATATGTATCAAG 162923 Query 91066 CCATCTGGGTTGGATTTTGACCTTGAAAACGGGTTGTATAATGCAGATAAAATTTCTTCA 91125 || | ||| ||||||||||| | || || || || | ||||| | || ||| | | | Sbjct 162924 CC-TATGGATTGGATTTTGATTTAGAGAATGGTTTATTTAATGATAAGAATATTGCATTA 162982 Query 91126 GCACT---TTCTGTTGTAAAGTCAAAATATCCCGAATGTAATATTTCCTTAACACTACCA 91182 ||| | || ||| || ||||||||||| | | |||| |||||||| ||| Sbjct 162983 GCATTGAAATCCGTT---AAATCAAAATATCCAAATCTTGTTATTAGTTTAACACTTCCA 163039 Query 91183 ACAATGCCAACTGGTTTAACA 91203 || | ||||||||||||||| Sbjct 163040 ACCTTACCAACTGGTTTAACA 163060 >seq4 Length=499170 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 194236 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAACTTGTGG 194294 ||| |||| |||| || ||||| || | || | |||| |||||| || |||||||| Sbjct 388639 CGTGTACCACAAATTGGTGATAAGTTCTCCTCTCGTCATGG-TCAAAAGGGTACTTGTGG 388697 Query 194295 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 194354 |||| |||| ||||| ||| | |||| || | ||||| || ||||||||||| Sbjct 388698 TATGGCTTATCGTCAAGAGGATTTACCATGGACTGTTGAGGGTATTGTTCCAGATATTAT 388757 Query 194355 TATCAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 194404 | | |||||| || ||||| || | ||||||||| |||| | |||| Sbjct 388758 TGTAAATCCACATGCCATTCCATCTCGTATGACCATTGGTCAATTGATTG 388807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632481717598360