Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq175 96.9 3e-15 seq64 89.7 4e-13 seq160 87.8 1e-12 seq6 87.8 1e-12 >seq175 Length=69793 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||| || || ||||| || || ||||| || ||||| ||| || | Sbjct 5778 ATGCAAATCTTTGTTAAGACATTAACTGGTAAGACCATCACTCTCGAAGTTGAGGGCTCA 5719 Query 110332 CGATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 |||| | | | | || |||||| || ||| ||||||||||| | || || | Sbjct 5718 -GATAATATTGAAAATGTGAAAACAAAA-ATTCAAGACAAAGAAGGTATCCCACCTGACC 5661 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||||||| | |||| || |||||||| |||| |||| | ||| | | ||||||| Sbjct 5660 AACAAAGATTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACA 5601 Query 110451 ACATTCAAAAAGAATCTAC 110469 |||||||||||||||| || Sbjct 5600 ACATTCAAAAAGAATCCAC 5582 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| | || || || ||||| ||| | ||| || | | Sbjct 5550 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAGACCATCACCTTGGAAGTTGAAGGTAGC 5491 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | |||||| |||||| ||||||||||| | || || ||| Sbjct 5490 GATAACATTGAGAATGTAAAAACCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAA 5431 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| || |||||||| |||| |||| | || | | ||||||||| Sbjct 5430 CAAAGATTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 5371 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || | ||| |||| | ||| | |||| || Sbjct 5370 ATTCAAAAGGAATCCACTCTCCACTTGGTACTCAGATTAAGAGGTGG 5324 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325 ||||| ||||||||| ||||| |||||| | || || ||||||||||| | ||| || Sbjct 6241 ATTTATAATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATTACTTTAGAAGTAGA 6182 Query 110326 GC---CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC 110382 ||||| ||| || | |||||| || ||| ||||| ||||| | || Sbjct 6181 AGGTTCTGACAATATTGAAA---ATGTAAAAACCAAAATTCAAGACAAGGAAGGTATTCC 6125 Query 110383 CGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGC 110442 || |||||| | ||||||| || |||||||| |||| |||| | || | | Sbjct 6124 ACCAGACCAACAACGTCTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTC 6065 Query 110443 GGATTACAACATTCAAAAAGAATCTAC 110469 ||||||||||||||||| || || || Sbjct 6064 TGATTACAACATTCAAAAGGAGTCCAC 6038 >seq64 Length=175976 Score = 89.7 bits (98), Expect = 4e-13 Identities = 166/243 (68%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| |||||||||||||| ||||| || || ||||| ||| | Sbjct 77770 ATGCAAATTTTTGTAAAAACTTTAACCGGTAAAACAATCACACTCGAAGTAGAGGGTTCT 77711 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | |||||| || || || ||||| || | || |||||| Sbjct 77710 GATAACATTGAAAATGTAAAAGCCAAAATCCAAGATAAAGAGGGTATCCCACCAGATCAA 77651 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| || |||||||| | || |||| | || | | ||||| || Sbjct 77650 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCAGATTATAAT 77591 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA---AAAATAAA 110509 |||||||||||||| || | ||| | || | ||| || |||| || | |||| ||| Sbjct 77590 ATTCAAAAAGAATCAACTCTCCACTTAGTACTTAGATTGAGAGGTGGTAATTAAAAAAAA 77531 Query 110510 TAA 110512 ||| Sbjct 77530 TAA 77528 >seq160 Length=80418 Score = 87.8 bits (96), Expect = 1e-12 Identities = 166/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| ||||| || |||||||| || | ||| || | Sbjct 3532 ATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACATTGGAAGTTGAAGGTTCT 3591 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | | ||||| || ||| || |||||||| | | | | ||||| Sbjct 3592 GATAATATTGAAAATGTAAAGGCAAAAATTCAAGATAAAGAAGGTATCCACCAG-ATCAA 3650 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| ||||| || | || |||| | || | | ||||| ||| Sbjct 3651 CAAAGATTAATTTTTGCTGGTAAGCAATTAGAAGATGGTCGTACTTTATCAGATTATAAC 3710 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA--AAATAAAT 110510 |||||||||||||| || | || | || |||||| | |||| ||||| ||| |||| Sbjct 3711 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGGAAATTAAAAAAAT 3770 Query 110511 AA 110512 || Sbjct 3771 AA 3772 >seq6 Length=461532 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/245 (68%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 110255 ATTTATAAGAGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACC 110314 ||| ||| |||| || |||||||| || || ||||| ||||| || |||||||| || Sbjct 390836 ATTAATAGCAGATC-AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACT 390778 Query 110315 GTCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAA 110374 ||||| || | || | ||| | || ||| |||||| ||||||||| Sbjct 390777 CTCGAAGTTGAAGGTTCAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAA 390718 Query 110375 GGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGA 110434 || | || ||||||||| | ||||| | ||| |||||||| | || |||| | Sbjct 390717 GGTATCCCACCAGATCAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGT 390658 Query 110435 ACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGA 110494 || | | ||||| ||||| ||||| ||||| || | ||| | || |||||| | || Sbjct 390657 ACTTTATCCGATTATAACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGA 390598 Query 110495 GGGGG 110499 || || Sbjct 390597 GGTGG 390593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412836583587521