Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq201 102 1e-16 seq203 95.1 2e-14 seq4 87.8 2e-12 >seq201 Length=50797 Score = 102 bits (112), Expect = 1e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 163019 GGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACAAAATTTATGTGAAACTATA 163078 || |||||||| |||||||| ||| | || ||||||||| ||| | ||| || Sbjct 29056 GGTTATGTTGCTGAACAAACTTCATATCATCATGGTGAACAATCTTTGAATTCAACAATC 29115 Query 163079 ATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGCATTACTTGAACCTGATGGT 163138 |||| | || || ||||| ||||| |||||||| | |||| | ||| | |||| Sbjct 29116 GTTAAAATGGCTCATGATTTCGTTGGCTCAAATAATTTGCCATTGTTAACACCAGCTGGT 29175 Query 163139 CAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGCATCAAGATATATTTATACC 163198 ||||||||||| | ||| |||| ||| ||||||||| | |||||||||||| || Sbjct 29176 CAATTTGGTACTCGTTTACAAGGTGGTTCAGATTCTGCATCGGCAAGATATATTTTCACA 29235 Query 163199 AAAC 163202 |||| Sbjct 29236 AAAC 29239 >seq203 Length=49749 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/178 (73%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 114834 TACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAGAATGGAATTGAAGTAGG 114893 ||| ||||| ||||||| ||||||| |||||| | || ||| ||||| || Sbjct 27682 TACCTATGGTAGAATTGCACCAAGATCAGGTTTAGCATGGAAAAATTTCATTGATTGTGG 27741 Query 114894 AGCAGGTGTTATCGATGAAGATTATCAAGATAATTTAATGGT-TA-TTTTACATAACCAT 114951 || ||||| |||||| |||||| || ||| | |||| || ||||| ||||| Sbjct 27742 CGCTGGTGTAATCGATTCAGATTACAGAGGCAATGT--TGGTGTAGTTTTATTCAACCAC 27799 Query 114952 TCAGATGTTGATTTTAAAATTGAAGTTAAAGATAGAATTGCTCAATTAATTGTTGAAA 115009 ||||||||||||||| ||||| ||| || ||||||||||||||||| |||||| Sbjct 27800 TCAGATGTTGATTTTTCAATTGCTGTTGGTGACAGAATTGCTCAATTAATCTTTGAAA 27857 >seq4 Length=499170 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||| |||| |||| || ||||| || | || | |||| | |||| || |||||||| Sbjct 388639 CGTGTACCACAAATTGGTGATAAGTTCTCCTCTCGTCATGGTC-AAAAGGGTACTTGTGG 388697 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 |||| |||| ||||| ||| | |||| || | | ||||| || ||||||||||| Sbjct 388698 TATGGCTTATCGTCAAGAGGATTTACCATGGACTGTTGAGGGTATTGTTCCAGATATTAT 388757 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 | | |||||| || |||||||| | ||||||||| |||| | |||| Sbjct 388758 TGTAAATCCACATGCCATTCCATCTCGTATGACCATTGGTCAATTGATTG 388807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635169684099160