Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq201 109 7e-19 seq38 91.5 2e-13 seq203 86.0 8e-12 seq22 86.0 8e-12 >seq201 Length=50797 Score = 109 bits (120), Expect = 7e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 || ||||| | ||| || || |||||||| |||||||| ||| | ||||||||| Sbjct 29035 ATCAAAGTATCACAACTATCGGGTTATGTTGCTGAACAAACTTCATATCATCATGGTGAA 29094 Query 165220 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 165279 ||| ||| | ||| || |||| | || || ||||| ||||| |||||||| | Sbjct 29095 CAATCTTTGAATTCAACAATCGTTAAAATGGCTCATGATTTCGTTGGCTCAAATAATTTG 29154 Query 165280 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCG 165339 |||| | ||| | ||||||||||||||| | ||| |||| ||| ||||||||| Sbjct 29155 CCATTGTTAACACCAGCTGGTCAATTTGGTACTCGTTTACAAGGTGGTTCAGATTCTGCA 29214 Query 165340 GCATCAAGATATATTTATACCAAAC 165364 | |||||||||||| || |||| Sbjct 29215 TCGGCAAGATATATTTTCACAAAAC 29239 >seq38 Length=218761 Score = 91.5 bits (100), Expect = 2e-13 Identities = 216/321 (67%), Gaps = 14/321 (4%) Strand=Plus/Plus Query 89564 GGGCTGCACAAGATACTATGCCTTTAAATTGGTCTTTACCTTTGGCCAAAGAACTTG--- 89620 |||| |||||| ||| ||| | ||||| | ||||| || || ||||| || Sbjct 162747 GGGCAGCACAACCTACAATGGGAATGGATTGGGCATTACCATTAGCAAAAGATATTCAAC 162806 Query 89621 CTTTAGTTAAAAAAGAAACAATTGTTTCTTTTGGTGGAGCAAGTAATCCAGATATTTCAT 89680 | | | |||||||| || |||| |||||||| ||| || | |||||| || Sbjct 162807 CATCAAATAAAAAAGTTG---TTATTTCATTTGGTGGTGCATCAAACCAAGATATCTCTA 162863 Query 89681 CTGAATTTTCAATAGAAGAACTTATTCAAACATATCTTGATATTATTGAAATGTA-CAAC 89739 | ||| ||| | || || | ||| |||| ||| | | | ||||| ||||| ||| Sbjct 162864 TTCAATATTCCGTTGAGAAATTGATTGAAACCTATGGTAAATTCATTGATATGTATCAAG 162923 Query 89740 CCATCTGGGTTGGATTTTGACCTTGAAAATGGATTGTATAATGCAGATAAAATTTCTTCA 89799 || | ||| ||||||||||| | || ||||| || | ||||| | || ||| | | | Sbjct 162924 CC-TATGGATTGGATTTTGATTTAGAGAATGGTTTATTTAATGATAAGAATATTGCATTA 162982 Query 89800 GCA---ATTTCTGTTGTAAAGTCAAAATATCCCGAATGTAATATTTCCTTAACACTACCA 89856 ||| | || ||| || ||||||||||| | | |||| |||||||| ||| Sbjct 162983 GCATTGAAATCCGTT---AAATCAAAATATCCAAATCTTGTTATTAGTTTAACACTTCCA 163039 Query 89857 ACAATGCCAACTGGTTTAACA 89877 || | ||||||||||||||| Sbjct 163040 ACCTTACCAACTGGTTTAACA 163060 >seq203 Length=49749 Score = 86.0 bits (94), Expect = 8e-12 Identities = 128/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 115137 TACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAAAATGGTATTGAAGTAGG 115196 ||| ||||| ||||||| ||||||| |||||| | |||||| ||||| || Sbjct 27682 TACCTATGGTAGAATTGCACCAAGATCAGGTTTAGCATGGAAAAATTTCATTGATTGTGG 27741 Query 115197 AGCAGGTGTTGTCGATGAAGATTATCGAGATAATTTAATGGT-TA-TTTTACATAACCAT 115254 || ||||| ||||| |||||| ||| ||| | |||| || ||||| ||||| Sbjct 27742 CGCTGGTGTAATCGATTCAGATTACAGAGGCAATGT--TGGTGTAGTTTTATTCAACCAC 27799 Query 115255 TCAGATGTTGATTTTAAAATTGAAATTAAAGATAGGATTGCGCAATTAATTGTTGAAA 115312 ||||||||||||||| ||||| || || || ||||| |||||||| |||||| Sbjct 27800 TCAGATGTTGATTTTTCAATTGCTGTTGGTGACAGAATTGCTCAATTAATCTTTGAAA 27857 >seq22 Length=316226 Score = 86.0 bits (94), Expect = 8e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 |||||||| |||||||| | ||| |||||| | ||||| | | ||| | |||||||| Sbjct 102207 ATTAAAGTCGCTCAATTGATTGGTTATGTTTCTGAACATTCTGCATATCATCATGGTGAG 102148 Query 165220 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 165279 || ||||| | ||| || | | || ||||| ||||||||| |||||||||| Sbjct 102147 GCAAGTTTATATTCAACCATCGTCGGTATGGCACAAGAGTTTGTTGGTTCAAATAATATC 102088 Query 165280 GCATTACTTGAA-CCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 165338 || ||||| || | ||| | |||||| ||| | | ||| |||||||||| | | Sbjct 102087 AATCTA-TTGAATCCAGCAGGTTCTTATGGTACTAGAATTGCAGGTGGTAAAGATTGTTC 102029 Query 165339 GGCATCAAGATATATT 165354 ||||||||||| Sbjct 102028 AAGTGCAAGATATATT 102013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628523366929920