Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20firmibasis_20[genbank_20GCA_5F000277485.1_202012-07- 10] 997 sequences; 30,559,666 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq224 89.7 9e-13 seq160 86.0 1e-11 >seq224 Length=37943 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/134 (74%), Gaps = 11/134 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || |||||||||||||| ||||| | || |||||||| Sbjct 18834 AGAGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTACGACCATCTTCTAATTGTTTA 18893 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| |||| ||||||||| |||| | || |||| || ||||||||||| ||| Sbjct 18894 CCAGCAAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGAATCTTGGCT 18953 Query 81753 TTTATATTTTCAAT 81766 || | ||||||||| Sbjct 18954 TTAACATTTTCAAT 18967 >seq160 Length=80418 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/134 (73%), Gaps = 11/134 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || || ||||| || |||| ||| | || |||||||| Sbjct 3503 AGAGTTGATTCTTTTTGAATGTTATAGTCTGATAAAGTACGACCATCTTCTAATTGTTTA 3444 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| |||| |||||||||| |||| | || |||| ||||||||||| |||||| Sbjct 3443 CCAGCAAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATTTTTGCT 3384 Query 81753 TTTATATTTTCAAT 81766 || | ||||||||| Sbjct 3383 TTAACATTTTCAAT 3370 Score = 86.0 bits (94), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 12/134 (9%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || || |||||||| |||| ||| | || |||||||| Sbjct 3730 AGAGTTGATTCTTTTTGAATGTTATAATCTGATAAAGTACGACCATCTTCTAATTGCTTA 3671 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| |||| |||||||||| |||| | || |||| ||||||||||| ||||| Sbjct 3670 CCAGCAAAAATTAATCTTTGTTGATCTGGTGG-ATACCTTCTTTATCTTGAATTTTTGCC 3612 Query 81753 TTTATATTTTCAAT 81766 |||| ||||||||| Sbjct 3611 TTTACATTTTCAAT 3598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903399941237920